[ccp4bb] AW: [ccp4bb] size exclusion columns

2018-04-29 Thread Matthias Haffke
I would recommend to look at the GE Superose6 increase 3.2/300 columns if you aim at high resolution with small sample volumes (you will be very limited in flow rate though). For a much faster analysis with sufficient resolution, try the 5/150GL columns. Attached to an HPLC you can have runtime

Re: [ccp4bb] Superposition of electron density

2013-08-29 Thread Matthias Haffke
Hi Jan! Phenix can do that - have a look here: http://www.phenix-online.org/documentation/superpose_maps.htm Best, Matthias Date: Thu, 29 Aug 2013 17:17:36 +0200 From: lohoefener@mh-hannover.de Subject: [ccp4bb] Superposition of electron density To: CCP4BB@JISCMAIL.AC.UK Dear all,

Re: [ccp4bb] protein stain, B-PER‏

2012-03-15 Thread Matthias Haffke
Hi all, concerning the staining, we get good results with a self-made "instant blue". First staining is achieved within 30min, full staining after maximal 4 hours I would say. You don't need to destain (still possible with H2O) since the background is not stained. Sensitivity is better than st

[ccp4bb] Postdoc Position at EMBL Grenoble

2011-08-26 Thread Matthias Haffke
The Berger laboratory at the European Molecular Biology Laboratory (EMBL) Grenoble, France seeks to recruit an outstanding postdoctoral scientist in structural biology with a research focus directed towards the structure of macromolecular assemblies. The major theme within the group is the stru

Re: [ccp4bb] Sequence Alignment Question‏

2011-08-19 Thread Matthias Haffke
Another quite powerful tool is ESPript ( http://espript.ibcp.fr/ESPript/ESPript/ ), which takes e.g. clustalw outputs and allows various manipulations (change of colors, add text, secondary structures, etc.) Matthias From: CCP4 bulletin board [CCP4BB@JI

[ccp4bb] Postdoc Positions at EMBL Grenoble

2011-08-18 Thread Matthias Haffke
The Schaffitzel laboratory at the European Molecular Biology Laboratory (EMBL) Grenoble, France seeks to recruit outstanding postdoctoral scientists in structural biology. We study the structure and function of large macromolecular complexes in gene expression. The project involves structure de

Re: [ccp4bb] Reporting average B values for solvent, chain, ligand etc

2011-03-10 Thread Matthias Haffke
Hi James, You can do this with MOLEMAN / MOLEMAN2 quite easily (see the manual here: http://xray.bmc.uu.se/usf/moleman2_man.html) Best Matthias Date: Thu, 10 Mar 2011 14:19:21 + From: james.pearce.h...@gmail.com Subject: [ccp4bb] Reporting average B values for solvent, chain, ligand etc

Re: [ccp4bb] Question about movie making

2011-03-07 Thread Matthias Haffke
Hi Mark, just use the "Windows Movie Maker" - it's easy to use and comes along with Windows (or can be downloaded via microsoft.com). This will help you to generate .wmv output files of any kind of video and / or picture files you provide as input files. The best possible quality output format

Re: [ccp4bb] CCP4MG in Windows7

2010-08-20 Thread Matthias Haffke
Dear John, there is also a special mailing list for CCP4MG issues - however, it seems not to be used frequently... Just wanted to mention that there is one. Regarding your problems: I'm using CCP4MG (2.4.1) on several Windows7 (64 bit Prof.) machines and everything works just fine; with the exc

Re: [ccp4bb] [ccp4] domain contact surface

2010-02-19 Thread Matthias Haffke
Dear Jane, try to split your protein into two chains (e.g. domain 1 --> chain A / domain 2 --> chain B in a PDB file) and use the PISA server for processing. Besides several interfaces with symmetry mates, one should represent your domain/domain interface based on chain A/B you've chosen. Gr