efully the content of the segid field in your pdb input file.
Michele Lunelli
Department of Cellular Microbiology
Max Planck Institute for Infection Biology
Campus Charité Mitte
Charitéplatz 1
D-10117 Berlin
Chiacchiera con i tuoi amici in tempo reale!
http://it.yahoo.com/mail_it/foot
log file. The search model
consists of a polyala of 42 residues.
Thank you,
Michele Lunelli
Department of Cellular Microbiology
Max Planck Institute for Infection Biology
Campus Charité Mitte
Charitéplatz 1
D-10117 Berlin
Chiacchiera con i tuoi amici in tempo reale!
http
resolution cutoff?
Thank you in advance,
Michele Lunelli
MPI for Infection Biology
Berlin - Germany
Maybe some post is rejected because (incorrectly) marked as spam, it happens the
same to me with yahoo..
Michele
Thomas Stout wrote:
Has anyone else noticed that they're only getting some of the postings
on the CCP4 mailing list?
nning, as well as the
Padilla-Yeates test. Is it possible, that I refined the structure in the wrong
space group?
Thank you in advance,
Michele Lunelli
Simon Kolstoe wrote:
I converted the resulting
XDS_ASCII.HKL using xdsconv and then f2mtz ready for phaser and refmac.
Sorry if this is obvious, but you should also run CAD after f2mtz, as reported
at the end of the log file XDSCONV.LP.
Michele
Dear all,
I have an orthorhombic crystal (pointless suggests most likely space groups P 2 21 21 or P 2 21 2)
with two molecules expected in the asymmetric unit. Analyzing the native Patterson map I found the
following peaks (in fractional coordinates):
CELL 63.0400 117.2500 133.6500 90.
In the paper "Computational analyses of the surface properties of
protein-protein interfaces" Acta Cryst. (2007). D63, 50-57, it is described how
to do it using a GRID-type hydrophobic potential in CCP4MG. However, I could not
find the corresponding menus in CCP4MG when I (quickly) tried.
Mic
the
> arpwarp_setup.csh, I get the message: An interface to ARP/wARP is not
> available. The ARP/wARP interface doesn't appear to have been installed.
>
>
> Any further suggestions are most welcome.
>
> Cheers,
> Klaas
>
> ---
> Dr. Klaas Max
> MDC Berlin
Dear Arefeh,
Arp/warp works with standard space groups, therefore you have to reindex P21221
to P21212. In this
message from Anastassis Perrakis you can find some advice:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0709&L=CCP4BB&T=0&F=&S=&P=100954
Michele
Arefeh Seyedarabi wrote:
> Hi,
I am doing SAD phasing with the latest autoSHARP and CCP4 6.1.1 (SCALA version
3.3.9). The space
group is P21 with unit cell dimension 52.67, 28.61 and 105.16. If I give the
data as unmerged SHELX
file, it happens that the third cell dimension become identical to the first
when the data are
mer
Clemens Vonrhein wrote:
>
> SCALA (as far as I know) gets its cell dimensions from the so-called
> batch header (since each image could have a different cell it averages
> those). So the problem isn't yet visible in your output - just do
>
> % mtzdmp CONVERT/F2MTZCOMBAT_peak.mtz -b
>
> and lo
Dear all,
I am trying to solve a structure at 2.05 A resolution by molecular replacement.
The space group
seems to be P21, with unit cell dimension 52.63, 29.43, 104.970 and beta =
95.60.
Only one copy of the protein should be present in the asymmetric unit, with 58%
of solvent content.
The sea
13 matches
Mail list logo
