Re: [ccp4bb] shelx HKLF4 to mtz conversion?

2007-07-10 Thread Tim Grune
PROTECTED] http://www.br.caltech.edu/cmclab -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgpuMHpGIBBuY.pgp Description: PGP signature

Re: [ccp4bb] Help with reducing crystal mosaicity

2007-07-09 Thread Tim Grune
like a very good candidate. -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgpEJuDKsMqme.pgp Description: PGP signature

Re: [ccp4bb] The CCP4 license is ambiguous

2007-07-05 Thread Tim Grune
you think that Cygwin has been in violation of the GPL all these years? Or perhaps I misunderstand. Are you saying that the current CCP4 license does not permit combination with non-CCP4 code? -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgpJMJQenaGY9

Re: [ccp4bb] compiling problems ccp4-6.0.2 and gcc-4.1.2

2007-06-28 Thread Tim Grune
' in /usr/lib/libc_nonshared.a(stack_chk_fail_local.oS) is referenced by DSO /usr/bin/ld: final link failed: Nonrepresentable section on output Any clues anyone? Thanks a lot! Miguel -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgpTCIrGsmR9F.pgp Description

Re: [ccp4bb] mac pro configuration for crystallographic computing

2007-06-21 Thread Tim Grune
trying to do, and as soon as they see what they want to see the make a screen shot (not excluding me here). cheers, Tim -Original Message- From: Tim Grune [EMAIL PROTECTED] To: CCP4BB@JISCMAIL.AC.UK Date: Thu, 21 Jun 2007 13:26:54 +1000 Subject: Re: [ccp4bb] mac pro configuration

Re: [ccp4bb] mac pro configuration for crystallographic computing

2007-06-20 Thread Tim Grune
-Version) one might get it to run under MacOSX And I think one can run Windows within MacOSX anyhow? (even though in my opinion one might as well use the gimp to paint your protein red-blue and still have about the same information content, but that's only my very personal opinion). Tim -- Tim

Re: [ccp4bb] problems with phaser for MR

2007-06-09 Thread Tim Grune
Hi, this looks very familiar to me. I am pretty certain you have phenix installed, too, and ccp4i does use the phenix version of phaser, which shows this behaviour. You can test this by typing 'which phaser' from the command line. You should make sure that $CBIN comes before the phenix path,

Re: [ccp4bb] COOT (version 0.2, Jan 2007) and .FCF file

2007-06-07 Thread Tim Grune
its name then set it from /usr/bin/awk to /bin/awk and things should work. Tim -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgpTdKrEILway.pgp Description: PGP signature

Re: [ccp4bb] Delphi question

2007-05-30 Thread Tim Grune
. (814)863-8703 Fax. (814)865-7927 --- --- -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgprmQpiu0XOQ.pgp Description: PGP signature

Re: [ccp4bb] Refmac5 restrained refinement could not keep the changes made in Turbo

2007-05-17 Thread Tim Grune
://get.games.yahoo.com/proddesc?gamekey=monopolyherenow -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgpBK9wvWHvLH.pgp Description: PGP signature

Re: [ccp4bb] MolRep with Phaser using a partial existing solution

2007-05-17 Thread Tim Grune
. Thanks a lot!! Jay -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia pgpm9nCMhOS3O.pgp Description: PGP signature

Re: [ccp4bb] MolRep with Phaser using a partial existing solution

2007-05-17 Thread Tim Grune
angles and fractional coordinate translations. Is this correct that I cannot input a pdb and fix it? If I cannot do this, then is there a quick way to identify the euler angles and coordinate translations for Phaser. Thanks a lot!! Jay -- Tim Grune Australian Synchrotron 800

Re: [ccp4bb] ccp4mg can't start

2007-05-16 Thread Tim Grune
influence on ccp4mg's performance? Tim -Original Message- From: Yanming Zhang [EMAIL PROTECTED] To: Tim Grune [EMAIL PROTECTED] Date: Wed, 16 May 2007 01:47:08 -0400 (EDT) Subject: Re: [ccp4bb] ccp4mg can't start Dear Tim, Thanks for your help. python 2.4.2 is the version. Following

Re: [ccp4bb] crystallographic magic

2007-05-15 Thread Tim Grune
). ;-) On Tuesday 15 May 2007 15:36, you wrote: uhhh? 2007/5/14, Tim Grune [EMAIL PROTECTED]: Hi, I just found out that my magic file contains a large section with respect to crystallographic file formats. I was pretty impressed. According to the header it is attributed to Joe

[ccp4bb] crystallographic magic

2007-05-14 Thread Tim Grune
Hi, I just found out that my magic file contains a large section with respect to crystallographic file formats. I was pretty impressed. According to the header it is attributed to Joe Krahn. Full ACK to him! Tim -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168

Re: [ccp4bb] CCP4 GUI

2007-05-10 Thread Tim Grune
As long as I have been using the ccp4i (which has been a couple of years now), this magic button has been there, and it has even been in the 'lower left corner': When you hold your mouse button on the Run button, a submenu appears, the second item of which is saying RunView com file. This opens

Re: [ccp4bb] can truncate import Rfree?

2007-05-03 Thread Tim Grune
-- Ian -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Tim Grune Sent: 03 May 2007 00:16 To: CCP4BB@jiscmail.ac.uk Subject: can truncate import Rfree? Hello, is it possible to make truncate preserve an rfree flag possibly present

[ccp4bb] can truncate import Rfree?

2007-05-02 Thread Tim Grune
another MTZ if I select the Ensure unique data add FreeR column in the truncate GUI. Is this the correct way to go by selecting the file itself for the reference mtz file? This seems extremely error prone to me. Cheers, Tim -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168

Re: [ccp4bb] further inconsistencies (was: tcltkblt and python distributions)

2007-04-20 Thread Tim Grune
Hello Oliver, if by 'conventional' you mean - download the source code - ./configure OS make make install I did not share your experience a couple of days ago when I did that. I used both the ftp and the download interface and nothing was missing. However from from your mentioning of