Hi, what resolution range do you use? You can try reducing it a little. How big is your cell? Tim
On Friday 18 May 2007 13:46, Jay Thompson wrote: > Hi, > > Thanks for the suggestions and quick reply. Suggestions work great! > > But I have another problem and looking back at the ccp4bb, I see that > Elenor had a similar problem late last year. The error message is as > follows: > > > <B><FONT COLOR="#FF8800"> > ---------------------------------- > OUT OF MEMORY ERROR: St9bad_alloc > ---------------------------------- > </FONT></B> > > <!--SUMMARY_END--> > -------------------- > EXIT STATUS: FAILURE > -------------------- > > CPU Time: 0 days 0 hrs 19 mins 53.80 secs (1193.80 secs) > Finished: Thu May 17 20:28:14 2007 > > </pre> > </html> > > The only suggestion from the ccp4bb threads that I could see was to try > running it on a different computer with more memory. I've tried running > the job on two different Mac G5 and I get the same error message. The > computers that I have are pretty new and have 2 GB of SDRAM. I'm surprised > that I have a memory problem. I'm also using the Phaser 1.3.3 (I'm > assuming this is the latest version). Thanks for all your help, in > advance. > > Jay > > On 5/17/07, Jay Thompson <[EMAIL PROTECTED]> wrote: > > Hi, > > > > I have a question with molecular replacement using Phaser. I'm trying to > > solve a complex and I have a partial molecular replacement solution > > solved using another program. This solution is correct and makes up ~50% > > of the entire complex. I wanted to fix this solution and search for > > another small fragment of the complex using Phaser. I've been reading > > the Phaser manual and it seems that I cannot input a pdb with this > > partial solution and tell the program to fix this molecule. It seems > > that fixed solutions can be only input by putting in its Euler angles and > > fractional coordinate > > translations. Is this correct that I cannot input a pdb and fix it? If > > I cannot do this, then is there a quick way to identify the euler angles > > and coordinate translations for Phaser. > > > > Thanks a lot!! > > > > Jay -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia
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