[ccp4bb] How to show bonds between ligands and metal which are around 1.8-2.0 Ao far away, in pymol..??

Hi! their is no connection between the metal and ligand in my pdb.. how can i generate bonds between them using pymol..?? by the way the distance between ligands and metal is 1.8-2.0 Ao...?? Hussain Send free SMS to your Friends on Mobile from your Yahoo! Messenger. Download Now!

Re: [ccp4bb] How to show bonds between ligands and metal which are around 1.8-2.0 Ao far away, in pymol..??

Hussain Bhukyagps wrote: Hi! their is no connection between the metal and ligand in my pdb.. how can i generate bonds between them using pymol..?? by the way the distance between ligands and metal is 1.8-2.0 Ao...?? Hussain Hi, What about specifying the bonds with CONECT records in the PDB

Re: [ccp4bb] How to show bonds between ligands and metal which are around 1.8-2.0 Ao far away, in pymol..??

On Fri, 16 Apr 2010 14:31:02 +0530, Hussain Bhukyagps wrote: Hi! their is no connection between the metal and ligand in my pdb.. how can i generate bonds between them using pymol..?? by the way the distance between ligands and metal is 1.8-2.0 Ao...?? Hussain Send free SMS to your

Re: [ccp4bb] How to show bonds between ligands and metal which are around 1.8-2.0 Ao far away, in pymol..??

I am sorry for sending that blank email earlier. Hussain, A good way to do that is to use the pymol distance measuring wizard. It draws a dotted line between the atoms, and writes out the distance in numbers. You can hide the numbers and leave the dotted line behind. ganesh On Fri, 16

Re: [ccp4bb] How to show bonds between ligands and metal which are around 1.8-2.0 Ao far away, in pymol..??

Use bond command bond atom1, atom2 once you do that, any subsequent line and stick renderings will connect the atom1 and atom2 (you can right-click on the corresponding atom to see their full string representation). I assume you are trying to do something like this http://tinyurl.com/y2cdezj