[ccp4bb] LSQKAB error: you have failed to find any atoms to fit

2012-02-03 Thread sreetama das
Dear All, I am trying to superpose 2 chains from the same pdb file. I have generated 2 separate pdb files, each with one chain, using PDBSET. When I run LSQKAB with the 2 generated files (on UBUNTU 10.04, ccp4 6.2) it fails to run. The 2 input files CONTAIN the columns for

[ccp4bb] LSQKAB error: you have failed to find any atoms to fit

2012-02-03 Thread sreetama das
Dear All, I am trying to superpose 2 chains from the same pdb file. I have generated 2 separate pdb files, each with one chain, using PDBSET. When I run LSQKAB with the 2 generated files (on UBUNTU 10.04, ccp4 6.2) it fails to run. The 2 input files CONTAIN the columns for

[ccp4bb] LSQKAB error: you have failed to find any atoms to fit

2012-02-03 Thread sreetama das
Dear All, I am trying to superpose 2 chains from the same pdb file. I have generated 2 separate pdb files, each with one chain, using PDBSET. When I run LSQKAB with the 2 generated files (on UBUNTU 10.04, ccp4 6.2) it fails to run. The 2 input files CONTAIN the columns for

[ccp4bb] LSQKAB error

2009-03-16 Thread Anita Lewit-Bentley
Dear all, I am trying to compare several related structures using LSQKAB. In order to refine the superpositions, I'd like to use the option radius, to see the relative postion of certain residues within a given distance from a common point. The programme reads the commands OK: ALL

Re: [ccp4bb] LSQKAB error

2009-03-16 Thread Anita Lewit-Bentley
the side effect of forcing the program to read in the XYZINF input file. Norman From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of Anita Lewit-Bentley Sent: 16 March 2009 14:59 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] LSQKAB error Dear all, I am trying to compare several