I guess one way would be to seperate coordinates..
But doesnt overlapmap do that by default?
Eleanor
On 04/21/2011 10:25 PM, Maher Alayyoubi wrote:
Hi Everybody, I posted a question earlier on the bulletin regarding
how to calculate the map correlation coefficient using Overlapamp or
any
Hi Everybody, I posted a question earlier on the bulletin regarding
how to calculate the map correlation coefficient using Overlapamp or
any other program? My follow up question is, does anybody know how to
calculate the map correlation coefficient for the main chain and side
chain separately?
Hi Maher,
I posted a question earlier on the bulletin regarding
how to calculate the map correlation coefficient using Overlapamp *or
*
*any other program*? My follow up question is, does anybody know how to
calculate the map correlation coefficient for the main chain and side
chain
Hi Maher
My version of Overlapmap reports the CC for main chain and for side
chain in the log-file (per residue and overall). Have you looked there?
-Bjørn
On 2011-04-21 14:25, Maher Alayyoubi wrote:
Hi Everybody, I posted a question earlier on the bulletin regarding
how to calculate the map
Hi Everybody, I am a new user on the ccp4 bulletin, I have a question on how
to calculate the map correlation coefficient using Overlapamp or any other
program?
Thank You,
Maher
cphasematch will do it in reciprocal space and give you a variety of
statistics, including F- and E-map correlation.
Go to reflection data utilities/phase comparison.
Maher Alayyoubi wrote:
Hi Everybody, I am a new user on the ccp4 bulletin, I have a question on
how to calculate the map
Hi Maher,
(...) how to calculate the map correlation coefficient using Overlapamp *or
any other program*?
in addition to suggested options:
- This will give you map CC calculated per residue or per atom (depending on
resolution of the data):
phenix.model_vs_data model.pdb data.hkl
