[ccp4bb] Question about drawing disulfide bonds in Pymol

2011-10-26 Thread Ke, Jiyuan
Dear All, I have a question regarding making disulfide bonds in Pymol. The overall structure is in cartoon representation. When I display the disulfide bond residues as stick models, the cysteine residues sitting on the beta strand have a gap from the actual beta-strand. If I check off the

Re: [ccp4bb] Question about drawing disulfide bonds in Pymol

2011-10-26 Thread Ed Pozharski
On Wed, 2011-10-26 at 10:15 -0400, Ke, Jiyuan wrote: flat sheet option IIUC, the set command in pymol allows per-selection application, i.e. if you try this in the command line instead of checking the option in the menu set cartoon_flat_sheets, 0, blah where blah is your selection. -- Oh,

Re: [ccp4bb] Question about drawing disulfide bonds in Pymol

2011-10-26 Thread Christian Roth
Hi, I think it should also work with the cartoon side chain helper option which adjust the cartoon slightly to prevent such situations. Christian Am Mittwoch 26 Oktober 2011 16:15:55 schrieb Ke, Jiyuan: Dear All, I have a question regarding making disulfide bonds in Pymol. The overall