Biosciences
Imperial College, LONDON
Tel: +44 (0)20 759 48895
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Yuri
[yuri.pom...@ufl.edu]
Sent: Friday, August 19, 2011 12:31 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Sequence Alignment
Jalview is another option.
http://www.jalview.org/
Sent from my HTC
- Reply message -
From: Yuri yuri.pom...@ufl.edu
Date: Fri, Aug 19, 2011 00:31
Subject: [ccp4bb] Sequence Alignment Question
To: CCP4BB@JISCMAIL.AC.UK
UID 23435 BODY[1]0 {238}
Hello Everyone,
A little off topic
Thanks everyone, for the help.
--
Yuri Pompeu
Hello Everyone,
A little off topic but, what is a good way to show (publication
quality) multiple sequence alignment?
I am trying to show conserved regions in related proteins from
different organisms.
Thank you
--
Yuri Pompeu
You can try this site:
http://espript.ibcp.fr/ESPript/cgi-bin/ESPript.cgi
If you have .pdb for one of your sequences, you'll be able to show secondary
structure also.
vitali
On Thu, Aug 18, 2011 at 6:31 PM, Yuri yuri.pom...@ufl.edu wrote:
Hello Everyone,
A little off topic but, what is a
...@ufl.edu
Subject: [ccp4bb] Sequence Alignment Question
To: CCP4BB@JISCMAIL.AC.UK
Date: Thursday, 18 August, 2011, 5:31 PM
Hello Everyone,
A little off topic but, what is a good way to show (publication quality)
multiple sequence alignment?
I am trying to show conserved regions in related proteins
Yuri wrote:
Hello Everyone,
A little off topic but, what is a good way to show (publication
quality) multiple sequence alignment?
I am trying to show conserved regions in related proteins from
different organisms.
Thank you
--
Yuri Pompeu
or clustalw, e.g.
