I believe SSM does just that:
http://www.ebi.ac.uk/msd-srv/ssm/
Eugene
On Tue, May 25, 2010 at 7:39 PM, Muhammed bashir Khan
wrote:
> Dear All;
>
> Can some body tell me a website for structure based sequence alignment,
> which can also pin point the similar and identical residues in different
Muhammed bashir Khan wrote:
Dear All;
Can some body tell me a website for structure based sequence alignment,
which can also pin point the similar and identical residues in different
colors.
regards
Bashir
PISA does just this - go to the ebi web site and select pisa
Sorry, the link was broken (problem with tomcat not restarting properly): Use
http://pxgrid.med.monash.edu.au/mustangmr-server
cheers
Ashley
On 26/05/2010, at 8:08 AM, Dhirendra K Simanshu wrote:
> Hi
>
> It seems the link (the one you send) is not working!
> Can you resend the correct lin
On 26/05/2010, at 6:53 AM, Jürgen Bosch wrote:
http://ww2.cs.mu.oz.au/~arun/Site/mustang.html
We have built a web server for this at
http://pxgrid.med.monash.edu.au:8080/mustangserver/
Cheers
Ashley
http://tcoffee.vital-it.ch/cgi-bin/Tcoffee/tcoffee_cgi/index.cgi?stage1=1&daction=EXPR
I would also recommend STRAP if you haven't tried it (
http://www.bioinformatics.org/strap/)
On Tue, May 25, 2010 at 2:53 PM, Jürgen Bosch wrote:
> http://ww2.cs.mu.oz.au/~arun/Site/mustang.html
>
>
> http://tcoffee.vital-it.ch/cgi-bin/Tcoffee/tcoffee_cgi/index.cgi?stage1=1&daction=EXPRESSO(3DCo
http://ww2.cs.mu.oz.au/~arun/Site/mustang.html
http://tcoffee.vital-it.ch/cgi-bin/Tcoffee/tcoffee_cgi/index.cgi?stage1=1&daction=EXPRESSO(3DCoffee)::Regular
or maybe what you are searching for is Consurf ?
http://consurf.tau.ac.il/
Jürgen
On May 25, 2010, at 2:39 PM, Muhammed bashir Khan wrote:
Dear All;
Can some body tell me a website for structure based sequence alignment,
which can also pin point the similar and identical residues in different
colors.
regards
Bashir
--
Muhammad Bashir Khan
Department for Biomolecular Structural Chemistry
Max F. Perutz Laboratories
University of
