Re: [ccp4bb] fit a peptide in isolated density

2010-09-03 Thread James Stroud
If you can't sequence it by examining the density then the following likely apply: You won't be able to tell from Rfree anyway. You probably won't be able to get an unambiguous answer from real space correlation. I thought there would be more, but that's about it. Your best bet is to care

[ccp4bb] fit a peptide in isolated density

2010-09-02 Thread
In an isolated piece of density, I want to fit a 7AA peptide fragment from a protein. Only the sequence of the whole protein (200AA) is known, and I don't know the peptide sequence. I think it's best to try from the beginning of the whole sequence to the end. So is there any software or scripts w