Dear all
Sorry for an off-topic question here. I wonder if anyone may be aware of
any search program which allows one to 'blast' a protein domain just like
we 'blast' a protein sequence? For example I have an epitope in hand and
would like to find out whether this also exists in other proteins. Mo
Like PDBeFOLD search?
https://www.ebi.ac.uk/msd-srv/ssm/
Jan
On Fri, Aug 6, 2021 at 8:43 AM Sam Tang wrote:
> Dear all
>
> Sorry for an off-topic question here. I wonder if anyone may be aware of
> any search program which allows one to 'blast' a protein domain just like
> we 'blast' a protein
Hi Sam,
Perhaps the Modeller service is what you’re looking for?
https://salilab.org/modeller/
Best wishes,
Chris
On Fri, 6 Aug 2021 at 07:42 Sam Tang wrote:
> Dear all
>
> Sorry for an off-topic question here. I wonder if anyone may be aware of
> any search program which allows one to 'blas
Perhaps DALI can be of use
http://ekhidna2.biocenter.helsinki.fi/dali/
Dal.
pá 6. 8. 2021 v 8:42 odesílatel Sam Tang napsal:
> Dear all
>
> Sorry for an off-topic question here. I wonder if anyone may be aware of
> any search program which allows one to 'blast' a protein domain just like
> we '
You might also find use in databases such as pfam, ecod, cath, scop.
Orly
On Fri, Aug 6, 2021, 09:43 Sam Tang wrote:
> Dear all
>
> Sorry for an off-topic question here. I wonder if anyone may be aware of
> any search program which allows one to 'blast' a protein domain just like
> we 'blast' a
sday, August 5, 2021 23:43
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] off-topic: structural motif / domain comparison
Dear all
Sorry for an off-topic question here. I wonder if anyone may be aware of any
search program which allows one to 'blast' a protein domain just like we
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