[ccp4bb] question on charge charge interactions

2014-03-27 Thread Tom Peat
Hello All, I am appealing to the community as I don't seem to be able to find through Google what I am looking for, and I just don't have the ability to look through every structure in the PDB to find this. I have what I think is an interesting case: a two domain protein structure with a

Re: [ccp4bb] question on charge charge interactions

2014-03-27 Thread Martin Hällberg
Hi Tom, For acidic side-chains, these kind of interactions are described by Maria Flocco and Sherry Mowbray in: Strange bedfellows: interactions between acidic side-chains in proteins. J. Mol. Biol. (1995) 254, 96-105. Best regards, Martin On Mar 28, 2014, at 12:11 AM, Tom Peat

Re: [ccp4bb] question on charge charge interactions

2014-03-27 Thread Patrick Loll
Two Arg side chains stack next to each other in ferritin and in GST (see, for example, Arg-59 and its symmetry mate in 3F33). I expect there are other examples, but these two come readily to mind. Cheers, Pat On 27 Mar 2014, at 7:11 PM, Tom Peat wrote: Hello All, I am appealing to the

Re: [ccp4bb] question on charge charge interactions

2014-03-27 Thread Joel Tyndall
] On Behalf Of Tom Peat Sent: Friday, 28 March 2014 12:12 p.m. To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] question on charge charge interactions Hello All, I am appealing to the community as I don't seem to be able to find through Google what I am looking for, and I just don't have the ability

Re: [ccp4bb] question on charge charge interactions

2014-03-27 Thread Tom Peat
] question on charge charge interactions Hello All, I am appealing to the community as I don't seem to be able to find through Google what I am looking for, and I just don't have the ability to look through every structure in the PDB to find this. I have what I think is an interesting case: a two

Re: [ccp4bb] question on charge charge interactions

2014-03-27 Thread Chad Brautigam
Tom, How about Magalhaes et al., J. Protein Chem., Vol. 13, p 195? Chad From: Tom Peat tom.p...@csiro.au To: CCP4BB@JISCMAIL.AC.UK Sent: Thursday, March 27, 2014 8:09 PM Subject: Re: [ccp4bb] question on charge charge interactions Hello Joel, I like