[COOT] Minor request selection status line

display manager. Maybe this is already different in newer versions or one can fix this with a script line – in any case there is plenty of real estate available in this bottom line. Cheers, BR -- Bernhard Rupp k.k. Hofkristallamt

Re: [COOT] PDB vs Cif read

s on other versions? My suspicion is that some part of the chain assignment is interpreted incorrectly and causes the mess. Best regards, BR ----- Bernhard Rupp (Hofkristallrat a. D) 001 (925) 209-7429 +43 (676) 571-0536 b...@ruppweb

[COOT] PDB vs Cif read

and happens on other versions? My suspicion is that some part of the chain assignment is interpreted incorrectly and causes the mess. Best regards, BR - Bernhard Rupp (Hofkristallrat a. D) 001 (925) 209-7429 +43 (676) 571-0536 b

[COOT] Jigglefit

.at the risk of looking really stupid here.where do I find the jigglefit in wincoot 9.4.1? Cheers, BR -- Bernhard Rupp http://www.hofkristallamt.org/ b...@hofkristallamt.org +1 925 209 7429 +43 676 571 0536

Re: [COOT] Link residues in different chains

h Specialist, Garcia Lab > Howard Hughes Medical Institute > Stanford University School of Medicine > Beckman B177, 279 Campus Drive, Stanford CA 94305 > Phone: (650) 723-6431 > > > On Wed, Mar 31, 2021 at 3:04 PM Paul Emsley < > pems...@mrc-lmb.cam.ac.uk <mailto:pems

[COOT] Link residues in different chains

x, BR ------ Bernhard Rupp <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofkristallamt.org +1 925 209 7429 +43 676 571 0536 - Doors and corners - that

[COOT] add_module_for cryo() ?

d like the modelling up there in the menu bar instead in the Calculate pull-down? Doable? Many thanx, BR -- Bernhard Rupp <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofk

[COOT] Copy fragment with instertion

Hi Fellows, wincoot 9.4.1 when I try to copy a fragment with insertions, say 855 to 855M, only the first residue gets copied Is there a different copy option I could/should use? Many thx, BR -- Bernhard Rupp <h

[COOT] visual mask editor - why

would be a compliment. Best, BR Brief question: Does something like a visual density mask editor exist? Thx, BR ------ Bernhard Rupp http://www.hofkristallamt.org/ b...@hofkristallamt.org <mailto:b...@hofkristal

Re: [COOT] List of preference functions

Example.. just dump it into .coot-preferences Best, BR From: Mailing list for users of COOT Crystallographic Software On Behalf Of Daniel Asarnow Sent: Wednesday, May 13, 2020 16:01 To: COOT@JISCMAIL.AC.UK Subject: List of preference functions Hi Paul, Is there a list of functions th

[COOT] fail on simple ligand task - disregard

swer (this got to be trivial, like a hidden 'load restraints' or so.). I am aware that 'LIG' has a monomer cif - feel free to invent anything else Sorry for the brainblock, probably the virus, BR ------ Bernhard Rupp

[COOT] fail on simple ligand task

7; has a monomer cif - feel free to invent anything else Sorry for the brainblock, probably the virus, BR -- Bernhard Rupp <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org>

[COOT] Startup Message 9.0 Ubuntu 16.04

"", line 1, in File "/home/ubuntu/.coot-preferences/br_preferences.py", line 7, in add_module_carbohydrate() NameError: name 'add_module_carbohydrate' is not defined rest ok and operative. Best, BR -- Bernhard

Re: [COOT] Wincoot 0.9

obviously…. Cheers, BR From: Daniel Asarnow Sent: Friday, April 24, 2020 18:59 To: b...@hofkristallamt.org Cc: COOT@jiscmail.ac.uk Subject: Re: Wincoot 0.9 If you get it to run, please let us know how! Good luck, -da On Fri, Apr 24, 2020 at 5:31 PM Bernhard Rupp mailto:h

Re: [COOT] Wincoot 0.9

days ago: https://github.com/bernhardcl/coot/releases Best, -da On Fri, Apr 24, 2020 at 4:49 PM Bernhard Rupp mailto:hofkristall...@gmail.com> > wrote: If you could reveal where you got wincoot 0.9.x from, one could perhaps assist… See no message to this effect maybe go

Re: [COOT] Carbohydrate torsion

or users of COOT Crystallographic Software mailto:COOT@JISCMAIL.AC.UK> > on behalf of Paul Emsley mailto:pems...@mrc-lmb.cam.ac.uk> > Sent: Thursday, May 9, 2019 7:21:01 AM To: COOT@JISCMAIL.AC.UK <mailto:COOT@JISCMAIL.AC.UK> Subject: Re: Carbohydrate torsion On 08/05/2019 12:17,

[COOT] Carbohydrate torsion

amino acid torsions and not in a strict 'general' sense? How can I do such arbitrary torsions in wincoot? For now, I can do it in ICM. Cheers, BR -- Bernhard Rupp <http://www.hofkristallamt.org/> http://www.hofkr

Re: [COOT] How to display the console in Coot?

I do not really understand the question. If I open wincoot, the console appears in a sperate window and includes exactly that info on SSM DMC ready for copy and paste? Best, BR From: Mailing list for users of COOT Crystallographic Software On Behalf Of Eleanor Dodson Sent: Friday, April

Re: [COOT] glassy map

Bingo! That is of course the one menu I did not check…. Many thanks, BR From: Jessica Bruhn Sent: Thursday, March 21, 2019 6:58 PM To: b...@hofkristallamt.org; Bernhard Rupp Cc: COOT@JISCMAIL.AC.UK Subject: Re: glassy map Hi Bernhard, In Display Manager click on “properties

[COOT] glassy map

.. Many thx, BR -- Bernhard Rupp <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofkristallamt.org +1 925 209 7429 +43

Re: [COOT] Calculating sigma value

A key difference perhaps is that on one situation (all mice, all electron density values) we are dealing with the entire population. There is no doubt about what the rmsd is, no expectations and uncertainty. Of that population 'sigma' is per definition the same. Whether it is a good idea to call

[COOT] SSM output

t, BR ------ Bernhard Rupp Crystallographiae Vindicis Militum Ordo <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofkristallamt.org +1 925 209 7429 +43 767 571 0536 -- Many plausible

[COOT] List of solvents

s add them again upon a coot restart. Thx! BR -- Bernhard Rupp Crystallographiae Vindicis Militum Ordo <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofkristallam

Re: [COOT] ccp4 QTMG

>..and clipped around the fragment I wanted and it is fine. ...and realizing the risk and temptations that come with it. ;-) Cheers, BR -Original Message- From: Mailing list for users of COOT Crystallographic Software [mailto:COOT@JISCMAIL.AC.UK] On Behalf Of PC Sent: Tuesday, August

Re: [COOT] [ot]: will we move structures with our hands?

I have already talked to a few people about that, because I have gotten the Kinect part going. The depth image and getting smooth coordinates from decent gesture recognition is not the problem. A bit more tricky is the inter-process-communication. I did it via a throttled http stream that gets sent

Re: [COOT] Coot Book of the Genesis

.@uni-konstanz.de] Sent: Saturday, February 11, 2012 4:20 AM To: b...@hofkristallamt.org Cc: Bernhard Rupp (Hofkristallrat a.D.); COOT@JISCMAIL.AC.UK Subject: Re: Coot Book of the Genesis The solution for the above problem would have been to symlink the existing /usr/lib64/libssl.so into coot&

[COOT] Kluge solving lib*so.6 problem

Hi Fellows, Kip has suggested a kludge by making links to the 64 bit libraries. I actually works as described, and the resulting coot 0.6.2 (revision 3562) does not have the known problem of the missing SVG icons the 0.7 had (see old PPSes below). Thx for all the tips, BR From: Kip G

Re: [COOT] Coot Book of the Genesis

Hi Fellows, following Kay's idea, I unpacked coot-0.6.2-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz: ./bin/coot-real: error while loading shared libraries: libssl.so.6: cannot open shared object file: No such file or directory ok, I yum it to be safe, find it in /usr/lib/libssl.so.6 and

Re: [COOT] clean install on RHEL 6.2

MAIL.AC.UK Subject: Re: clean install on RHEL 6.2 On 09/02/12 07:10, Bernhard Rupp (Hofkristallrat a.D.) wrote: > Dear Cootsies, > > following Paul's advice I started to autobuild coot using > http://lmb.bioch.ox.ac.uk/coot/build-install-coot-from-scratch.html > > It is a littl

Re: [COOT] Coot Book of the Genesis

...because the precompiled binary from the Coot site looks for some libraries it (and I) cannot find (see that January thread 'Help needed...' on the subject) and the suggestion there is to 'do it right and build from scratch'. But if you have another link to a RHEL binary I am happy to try again.

[COOT] Coot Book of the Genesis

forts and the Book actually is that per Genesis creation of the World took only 7 days... Best regards, BR PS: No more - zero please - bitching about Windows. Thank you. - Bernhard Rupp 001 (925) 209-7429 +43 (676) 571-0

[COOT] clean install on RHEL 6.2

d? Best regards, BR ----- Bernhard Rupp 001 (925) 209-7429 +43 (676) 571-0536 b...@ruppweb.org hofkristall...@gmail.com http://www.ruppweb.org/ - No animals were hurt or killed during the production of this email. -