Dear Taufik
2008/11/17 Taufik Al-Sarraj <[EMAIL PROTECTED]>:
> Hello everyone,
>
> I am new to Coot, I am trying to do a DNA mutation but unfortunately i have
> not been successful. I am using Mutate Residue Range.
> The error message i get is
>
> 'INFO:: mutate 2 to a ALA
> DISASTER! Not all nec
olecule, even though they are indeed
made up of three individual sugars with bonds between them.
Thank you for any pointers.
Best regards,
Folmer
--
Folmer Fredslund
invalid
> /dir/ccp4-6.3/coot-0.7/bin/**guile: error while loading shared libraries:
> /dir/ccp4-6.3/coot-0.7/lib/**libguile.so.17: ELF file OS ABI invalid
>
--
Folmer Fredslund
dware stereo on (Draw -> Stereo -> Hardware stereo)
> 3 - Load showing symmetry atoms (Draw -> Cell & Symmetry -> Master
> Switch:Show Symmetry Atoms: Yes)
>
> I would greatly appreciate advice on how to modify the .coot file to
> change these settings when coot starts up.
>
> Thank you,
> Joe Batchelor
>
--
Folmer Fredslund
> Hi everyone
> I'm a beginner in using Coot.
> Currently I'm trying to mutate multiple RNAs, but "mutate residue range"
> does not work. It seems that it could only mutate proteins. Does it happen
> to any other people? Any comments are warm welcome. Thanks again
>
> -Ming
>
--
Folmer Fredslund
Dear Joseph,
Yes, it's possible, but not you don't get any real time updates like you do
for the protein.
Here's a link to the fine manual:
http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html#Refine-All-Waters
Venlig hilsen
Folmer Fredslund
On Feb 5, 2014 12
Dear Joe,
We'll need info from the experts, but as far as I'm aware it's not possible
to get the animation.
Venlig hilsen/best regards
Folmer Fredslund
On Feb 5, 2014 7:05 PM, "Joseph Noel" wrote:
> Dear Folmer!
>
> Thanks! That is the one I am familia
down where in the graphics stack it occurs. For now I am trying
> >to get used to clicking "clear all labels" before rotating the view.
> >That's the "no" part.
> >
> >All other programs I use are fine, by the way.
> >I have only see this quirk with coot.
> >
> > Ethan
> >
> >
> >>
> >> Dale Tronrud
> >>
>
--
Folmer Fredslund
> FREE ONLINE PHOTOSHARING - Share your photos online with your friends and
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> Visit http://www.inbox.com/photosharing to find out more!
>
--
Folmer Fredslund
e
> structures (for example: Ramachandran Plot, Geometry analysis, peptide
> omega analysis and so on). For your information, I'm using Ubuntu 14.04
> LTS. I am hoping for help.
>
> Thanks.
>
> HK
>
--
Folmer Fredslund
/uname
> core: #f
> No core file found. No debugging
>This is not helpful.
>Please turn on core dumps before sending a crash report
>
>
> School of Life Science and Technology, RM 311B
>
> ShanghaiTech University
>
> 100 Haike Rd, Zhangjiang Hi-Tech Park
>
> Pudong District, Shanghai, P. R. China 201210
>
> Tel: 86-21-20685023 (Office)
>
> Tel: 86-21-20685048 (Lab)
>
--
Folmer Fredslund
with revision 6506 (the latest
nightly build made for Ubuntu 14.04, running on Ubuntu 14.04)
So, I hope the 6506 changes can be delivered in the next CCP4 update.
Cheers,
Folmer
--
Folmer Fredslund
Dear Andrea,
I would suggest, if at all possible, to use a more recent version of
coot, or at least test it.
0.8.1 is almost 2 years old, and the new ones are available for debian
as tar files here:
http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/
Even if you are not an administrator on
Hi Ahmad
What happens if you center on your protein?
My best guess would be that your map has some dummy symmetry so you get a
lot of unit cells visible when you zoom out.
Best regards
Folmer
ons. 20. mar. 2019 20.49 skrev Ahmad Khalifa :
> I have a cryo-EM map that I want to segment. I have s
l help?
I think the (set-contour-by-sigma-step-by-mol *step on/off? imol*)
might be what you're looking for.
According to the manual it's also in the menu, but as stated I can't check
this right now.
Hope this helps!
Folmer Fredslund
DTU Biosustain
tir. 5. nov. 2019 17.10 skrev Rob
Dear Paul
Congratulations on the release!
I've started using 0.9-pre recently instead of 8.9.2.
I like the menu changes and of course the new refinement menu and the way
it works.
The small dots on the CAs are truly very useful!
The glyco module is also very nice!
There's probably a ton more I'l
Dear Chen,
Please provide more information. This is not enough to help. A meaningful
response can't be expected if you do not provide more detailed information.
https://bernhardcl.github.io/coot/
Use the wincoot from the above link and if this is the one you have already
tried, provide detailed
needed OpenSSL.
After some fiddling, I then removed libcurl.so.4.5.0 file from the
$COOT_HOME/lib/ folder and restarted /Coot/, after which I did not have
any problems.
Not sure exactly what the problem was here, so perhaps this is an FYI
Cheers,
Folmer Fredslund
PS:
I initially tried with
years?
Thank you for the challenge!
Best regards
Folmer Fredslund
ons. 23. dec. 2020 12.34 skrev Paul Emsley :
> Here's a bit of holiday fun: A Coot Speedrun! Pit your Coot skills
> against the rest of the world!
>
> I believe that many Coot users are unfamiliar with the ways
Dear Paul
tor. 24. dec. 2020 09.53 skrev Paul Emsley :
> > Done on a MacBook Pro with an i5, external mouse, and without the ligand.
> > I have Oliver Clarke's scripts and the default keybindings.
> >
> > No prior knowledge version I guess? Except having used Coot for 10+
> years?
>
> "Prior know
Hi Smith
Don't worry about the gtk stuff, it shouldn't be necessary, I think that
error pops up all the time for me.
$ yum install fftw2
should hopefully fix the other library dependency.
(I found this easily online)
You don't say specifically, but I'm guessing you're not familiar with
Cento
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