that I’m using…do you think any updates to
the MacOS or something like that could have caused this issue for me?
Thank you for your help as always!
Best,
‘Kate’ Sun Kyung Kim
From: Paul Emsley
Date: Wednesday, February 21, 2024 at 9:35 AM
To: Kim, Sun Kyung , COOT@JISCMAIL.AC.UK
Subject: Re
:39 PM
To: Kim, Sun Kyung , COOT@JISCMAIL.AC.UK
Subject: Re: How does COOT determine protonation states
It is in the directory from which you started coot (that is, if coot can create
and write to such a directory (if not it is in your home directory)).
Paul.
On 15/02/2024 23:51, Kim, Sun
Thank you Lucrezia for your informative reply!
You suggested I look into coot-molprobity output directory. Where can I locate
this directory?
Thank you.
Best,
‘Kate’ Sun Kyung Kim
From: Lucrezia Catapano
Date: Friday, February 2, 2024 at 6:21 AM
To: Kim, Sun Kyung , COOT@JISCMAIL.AC.UK
Hello,
I’m using the Coot 0.9.8.91 EL. I am working jointly with a computational team
who are doing simulations on our PDB model. I’ve added hydrogens to my model
using Coot’s Validate -> Probe clashes function. The computational team asks,
when COOT adds protons using the probe clashes functio
