[COOT] Problem with decapitated protein

2010-03-03 Thread Norman Zhu
Hello everyone I am currently working with a protein shaped like dumbbell, with two well folded domains connected by a fixable linker in meddle. Anticipating movement at the hinge I asked Phaser to treat these two domains as separate entities. Phaser provided me with a solution but it

Re: [COOT] DNA structure refining problem

2010-02-09 Thread Norman Zhu
Tim, Yep, that was the problem. thanks a lot. Norm

[COOT] problem with refining DNA

2010-02-03 Thread Norman Zhu
hello there I am in the process of refining a protein structure complexed to DNA promoter site. I ran into difficulty as i try to move a few bases into patch of electron density that is obviously meant for them. dragging the bases with real space refine zone and/or regularize zone