Re: [COOT] Mutate to UNK?

2015-07-07 Thread Sampson, Jared
So UNK is not only for (unknown) amino acids any more... This has me wondering, would it be possible (or useful) to specify unknown amino and nucleic acids with an extension of the UNK (and UNX, UNL) three-letter codes? Perhaps something like: UNA (or UKA) = Unknown Amino acid UNY (or UKD) =

Re: [COOT] slow rotation of protein molecule in Coot

2013-07-17 Thread Sampson, Jared
Hi John - If this problem occurs primarily when you have maps loaded, you may also try reducing the Map Radius and Sampling Rate in Edit Preferences Maps Map Parameters. I've also found that enabling the Dynamic Map Sampling and Display Size options speed things up somewhat if you need to

[COOT] Coot Bad magic number errors

2011-03-10 Thread Sampson, Jared
Hi all - Two of the grad students in our structural biology course are having similar problems installing Coot on their Mac computers using the stand-alone packageshttp://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/Stand-Alone_Coot from Bill Scott's Crystallography on OS X website. I've pasted