Dear Don There is a program around called dssp2pdb from James Stroud which
does this job.
hope it works for you
all the best
Martyn
On Feb 9 2009, Don Kerkow wrote:
Hi all,
After seeing the string on secondary struct. assignment and molecular
visualization, I was wondering if anyone k
Check out the program KSDSSP
SP.
uoting "Don Kerkow" :
Hi all,
After seeing the string on secondary struct. assignment and
molecular visualization, I was wondering if anyone knows if there is
a way to produce the HELIX and SHEET records (i.e. explicit
secondary struct. assignment) autom
There is an open-source implementation of the dssp method called
ksdssp, written by the UCSF group that distributes Chimera. I haven't
had reason to use it yet but the source definitely has functions for
writing out the pdb records. I suspect that one of the BioPython/perl/
etc. modules ha
Hi all,
After seeing the string on secondary struct. assignment and molecular
visualization, I was wondering if anyone knows if there is a way to
produce the HELIX and SHEET records (i.e. explicit secondary struct.
assignment) automatically without depositing to PDB. Obviously, I
realize
