On 7/8/10 6:03 PM, Ed Pozharski wrote:
> By the way, if you are trying to get some structures aligned by
> accessing ssm via coot scripting, it may be more straightforward just to
> use superpose from ccp4 directly (that is what coot does, afaik).
I am doing a few other things in the script, but
Somehow I cannot reproduce this error. Can you send (confidential) pdb
files? I am afraid the only way to avoid this crash is not to call ssm
on the offending files.
And yes, it appears that the crash catcher doesnt know about no-graphics.
B
P.S. Coot does not call SSM from ccp4 but used it's
By the way, if you are trying to get some structures aligned by
accessing ssm via coot scripting, it may be more straightforward just to
use superpose from ccp4 directly (that is what coot does, afaik).
http://xkcd.com/763/
Cheers,
Ed.
On Thu, 2010-07-08 at 17:09 -0400, Ian Stokes-Rees wrote:
(coot-real-exit 0)
Thanks. That did it. Now my next question is whether the mailing
list is the right place to ask about segfaults on SSM superpose. For
certain structures I get:
superposing...
*** secondary structure does not match.
/programs/l/coot/0.6.2-pre-1-r2969-x86_64/bin/coot:
