Re: [deal.II] Re: Deal.II does not pass quick tests after installation

2016-07-12 Thread Thien Binh Nguyen
Thank you very much Mr. Pelteret for handling the case! Mr. Wells, I have tried compiling the library without using pthreads. The quicktests are now passed successfully [image: Hình ảnh nội tuyến 1] For the other question, we have CentOS 5.3 installed in our machine. But I have installed necess

[deal.II] geometry

2016-07-12 Thread benhour . amirian66
Dear All, I want to create a quarter of a circle in deal ii. In this case, I could create half of a circle with half_hyper_ball. I have tried GridTools::delete_unused_vertices or GridTools::transformation to remove or shift the same vertices to eliminate half of the circle. It would be very ki

[deal.II] Re: Problem building dealii with PETSc

2016-07-12 Thread Pete Griffin
Wolfgang: I installed: sudo apt-get install libpetsc sudo apt-get install petsc* and sudo apt-get install libopenlib sudo apt-get install openlib* I did not remove mpich since I assume since dealii was so specific in requiring the path info it shouldn't matter. MPIhello world works ok. gcc MPI-

[deal.II] dealii compile problem with Trilinos,p4est and mpi

2016-07-12 Thread Reza Zargar
Dear all, I am trying to compile the dealii-8.4.1 with trilinos-12.4.2, p4est and MPI. As I begin to compile the dealii I become the error following and I dont know how should I fix it. I become the MPI version 2.0 as I give the command 'mpiexec --version' but during dealii compile I see MIP_V

Re: [deal.II] Re: External point forces on elastic bodies

2016-07-12 Thread Bruno Turcksin
Hamed 2016-07-12 15:10 GMT-04:00 Hamed Babaei : > > I was wondering if I should use the rhs_vector when assembling the > cell_rhs as follows: > > cell_rhs(i) += (rhs_vector(i) * fe_values.JxW (q)); > > or do something else. would you be able to give me part of a sample code > where this functio

[deal.II] Re: External point forces on elastic bodies

2016-07-12 Thread Hamed Babaei
Bruno, Thanks for your reply. However, I Don't know how to use this function. In the documentation of the VectorTools::create_point_source_vector function it says: void VectorTools::create_point_source_vector ( const Mapping < dim

[deal.II] Re: External point forces on elastic bodies

2016-07-12 Thread Bruno Turcksin
Hamed, On Tuesday, July 12, 2016 at 12:40:35 PM UTC-4, Hamed Babaei wrote: > I want to solve a very simple elastic problem to obtain stress and > displacement field, applying a point force on one of the external surfaces > of a rectangular 2D domain. > Although I found some sort of external for

[deal.II] External point forces on elastic bodies

2016-07-12 Thread Hamed Babaei
Dear Friends, I want to solve a very simple elastic problem to obtain stress and displacement field, applying a point force on one of the external surfaces of a rectangular 2D domain. Although I found some sort of external forces only in step 8, it is not a point force. I was wondering how to a

Re: [deal.II] Re: Problem building dealii with PETSc

2016-07-12 Thread Wolfgang Bangerth
On 07/12/2016 09:59 AM, Pete Griffin wrote: sudo apt-get install libopenmpi-dev sudo apt-get install libmpich-dev(12.1.0) This may not get all of the MPI libraries, but only the development parts (e.g., the header files, etc). Is there no package simply called "openmpi" or "m

[deal.II] Re: Problem building dealii with PETSc

2016-07-12 Thread Pete Griffin
The next step as per Wolfgang: sudo apt-get install libopenmpi-dev Attempting making PETCs-3.6.4 from source after deleting directory and unzipping source. ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --with-mpi-dir=/usr/lib/openmpi =

Re: [deal.II] Re: Entry of the own problem in dealii

2016-07-12 Thread Wolfgang Bangerth
On 07/12/2016 07:14 AM, Denis Davydov wrote: thanks for your answer. Ok I will ask the question in a new post,but to your information I compiled Trilinos-12.4.2 and I become my mpi version 5.1.2 as I give the command 'mpiexec --version' bud during dealii compiling I see that the MPI_VERSION=2.0.

Re: [deal.II] Re: Entry of the own problem in dealii

2016-07-12 Thread Denis Davydov
Hi Reza, Something is certainly wrong with your build. Please open a new topic for this issue. Alternatively you can try building deal.II using tools like: Spack https://github.com/dealii/dealii/wiki/deal.II-in-Spack Candi https://github.com/dealii/candi Kind regards, Denis > On 12 Jul 2016, a

Re: [deal.II] Re: Entry of the own problem in dealii

2016-07-12 Thread Reza Zargar
Hello J-P, thanks for your answer. Ok I will ask the question in a new post,but to your information I compiled Trilinos-12.4.2 and I become my mpi version 5.1.2 as I give the command 'mpiexec --version' bud during dealii compiling I see that the MPI_VERSION=2.0. Best regards Reza Am Dienstag,

[deal.II] Re: PETScWrappers::SparseDirectMUMPS solver error

2016-07-12 Thread Jean-Paul Pelteret
Dear Rajat, Well, since the solver gets to 900 iterations (time steps?), its most likely a numerical or implementational issue rather than a installation issue. I was under the impression that your linear system couldn't be solved at all.Is there any adaptive refinement being performed or somet