[deal.II] error running after update

2018-04-24 Thread Jane Lee
Hi all, I'm unfortunately not very good with computers and the nitty gritty details of the things that go on behind the program. I'm running dealii-9.0 instead of 8.5.1 because i did a system update and 8.5.1 wasn't working. I stupidly did a minor update forgetting that i had issues after updat

[deal.II] Re: error running after update

2018-04-24 Thread Daniel Arndt
Jane, this looks like you are using a compiler (clang on macOS?) that doesn't define std::auto_ptr anymore and the used boost library doesn't detect this. A recent developer version (there will soon be a release) should circumvent the problem. How did you install deal.II? Are you using spack dir

Re: [deal.II] Building issue: undefined reference to SolutionTransfer

2018-04-24 Thread Timo Heister
can you post your detailed.log? If a tutorial like step-1 crashes, please 1. check the dynamic libraries by doing "ldd step-1" and post the output. Maybe you have conflicting libraries you are linking. 2. run under gdb: "gdb step-1" then "run" then "backtrace" to see where you crash. On Mon, Apr

Re: [deal.II] Modify quadrature weights on a per-cell basis?

2018-04-24 Thread Timo Heister
> I'm wondering if it's possible/straightforward to have per-cell quadrature > weights? I want to keep the quadrature positions the same but update the > quadrature weights. If you only have a few different sets of quadratures, I would think having one fe_values object for each quadrature might be

Re: [deal.II] Modify quadrature weights on a per-cell basis?

2018-04-24 Thread Wolfgang Bangerth
On 04/24/2018 10:05 AM, Timo Heister wrote: There are a few exceptions like get_function_values() that depend on the quadrature weights, Nah, that's not actually true :-) It's really only the JxW functions that make use of the quadrature weights. Best W. --

[deal.II] Publications based on deal.II

2018-04-24 Thread Wolfgang Bangerth
All, as you may know, we try to list all publications based on deal.II at http://dealii.org/publications.html We use this list to justify the effort we spend on writing this software, both to our universities as well as the funding agencies that support its development. In anticipat

[deal.II] Release preparations

2018-04-24 Thread Matthias Maier
All, we would like to start the release process for deal.II 9.0 soon. Please let us know if you have any last minute things that need to be addressed (bugs, documentation issues, configuration problems, etc.).

[deal.II] Re: error running after update

2018-04-24 Thread Denis Davydov
@Jane If you need to get it going soon, try following https://github.com/dealii/dealii/wiki/deal.II-in-Spack Roughly it's only 3 steps (assuming that you have XCode and command-line tools): 1. install gcc with spack 2. configure gfortran to be used with clang http://spack.readthedocs.io/en/la

[deal.II] Re: error running after update

2018-04-24 Thread Denis Davydov
p.s. given recent updates to petsc/slepc 3.9 you would need to install a current development version of deal.II, i.e. spack install dealii@develop The soon-to-be-release 9.0 will support new petsc/slepc. On Wednesday, April 25, 2018 at 12:04:06 AM UTC+2, Denis Davydov wrote: > > @Jane > > If you

[deal.II] Candi -ubuntu 17.10.1

2018-04-24 Thread feapman
Dear Prof. Bangerth, dear Dr. Köcher, dear Dealii Team, I would like to know, In Ubuntu *17.10.1*, can I use Candi. sh during installation without any bugs? Best regards, Yaakov -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.

Re: [deal.II] Building issue: undefined reference to SolutionTransfer

2018-04-24 Thread Jie Cheng
Hi Timo Thanks for your help! I disabled DEAL_II_WITH_THREADS and now it runs fine! Just out of curiosity, what do I lose with it disabled? What additional library do I need to build if I want to have it? (Internet is banned on the cluster I use, everything has to be built from source.) Best Jie