Bug#671524: Dropping coverage patch in Samtools ?

2015-06-16 Thread Dominique Belhachemi
Hi Charles, Let's just wait for 1.3. The patch isn't critical. Best -Dominique

Bug#671524: Dropping coverage patch in Samtools ?

2015-06-16 Thread Charles Plessy
> On Wed, Nov 26, 2014 at 3:49 AM, Charles Plessy wrote: > > > in recent versions of samtools, the mpileup command has a new option to > > specify the coverage at run time. > > > > Would it be fine to drop our patch that was raising the default coverage > > cap from 8,000 to 1,000,000 ? If yes,

Bug#671524: Dropping coverage patch in Samtools ?

2014-11-26 Thread Dominique Belhachemi
On Wed, Nov 26, 2014 at 3:49 AM, Charles Plessy wrote: > > in recent versions of samtools, the mpileup command has a new option > to specify the coverage at run time. > > Would it be fine to drop our patch that was raising the default coverage > cap > from 8,000 to 1,000,000 ? If yes, do you thi

Bug#671524: Dropping coverage patch in Samtools ?

2014-11-26 Thread Charles Plessy
Le Fri, Jul 27, 2012 at 02:51:13PM +, Debian Bug Tracking System a écrit : > > Changes: > samtools (0.1.18-2) unstable; urgency=low > . >* added patch to fix segfault in mpileup (Closes: #544976) >* added patch to fix coverage cap (Closes: #671524) Hi Dominique and everybody, in r