Bug#1068008: newer rust needed

2024-04-17 Thread Yaroslav Halchenko
Also I thought to try to build deno https://github.com/denoland/deno.git (ITP - #961337) https://bugs.debian.org/961337 deno but it needs ❯ cat rust-toolchain.toml [toolchain] channel = "1.77.2" components = ["rustfmt", "clippy"] so we are indeed well behind :-/ -- Yaroslav

Bug#1057126: Bug#1067104: Acknowledgement (server stalls: AH00046: child process 2876749 still did not exit, sending a SIGKILL)

2024-03-21 Thread Yaroslav Halchenko
"All ingenious is simple" -- thanks for sharing. I might redo following your example but to check more frequently. On Thu, 21 Mar 2024, Peter Krefting wrote: > My workaround is simpler, I have this line in root's crontab: > 5 * * * * curl --silent --max-time 5 --output /dev/null >

Bug#1057126: Bug#1067104: Acknowledgement (server stalls: AH00046: child process 2876749 still did not exit, sending a SIGKILL)

2024-03-21 Thread Yaroslav Halchenko
I think "my" https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1067104 is a duplicate of this one. I blame mod_wsgi since this I believe started to happen after I started to use it. FWIW here is a dirty workaround script I just crafted with chatgpt to monitor/restart apache2 as soon as it starts

Bug#1065203: Acknowledgement (regression: TypeError: find_username() missing 1 required positional argument: 'ssh_conf')

2024-03-18 Thread Yaroslav Halchenko
I submitted MR with this fix and overall small refactoring of the code there to improve functionality at https://salsa.debian.org/debian/dput-ng/-/merge_requests/34 Please review/merge/release -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org

Bug#1067104: server stalls: AH00046: child process 2876749 still did not exit, sending a SIGKILL

2024-03-18 Thread Yaroslav Halchenko
Package: apache2 Version: 2.4.57-2 Severity: important Server was working just fine for years and recently started to stall completely after 3-7 days of functioning normally. error logs get filled up first with AH03490 and then eventually with AH00045 messages: [Sun Mar 17 02:26:01.353381

Bug#1066931: Acknowledgement (replace debian/1.39 with 1.39 tag)

2024-03-15 Thread Yaroslav Halchenko
moreover that added tag was not even annotated as the release tags: hence ❯ git describe 1.38-11-gb182a2e ❯ git describe --tags debian/1.39-8-gb182a2e -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore

Bug#1066931: replace debian/1.39 with 1.39 tag

2024-03-15 Thread Yaroslav Halchenko
Package: python3-dput Version: 1.39 Severity: minor Tags: upstream X-Debbugs-Cc: Andreas Tille Hi Andreas, Thanks for taking care about recent release. But I got confused when I didn't see 1.39 tag, and only later detected that you tagged it as debian/1.39 . Unless there is team decision on

Bug#1065841: Taking over datalad to either Debian Med or Debian Science team

2024-03-12 Thread Yaroslav Halchenko
Hi Andreas, Let's keep DataLad under our (NeuroDebian) umbrella for now, since we are also upstream there and project is active. We are also working with Vasyl (CCed) to experiment with some semi-automation for package updates/backports (for neurodebian) and datalad (and some of its ecosystem)

Bug#1065841: datalad: Please drop dependencies on python3-distutils

2024-03-10 Thread Yaroslav Halchenko
Indeed, I think we did using distutils as of 0.18.0 On March 10, 2024 9:33:12 AM EDT, Graham Inggs wrote: >Source: datalad >Version: 0.19.6-1 >Severity: important >Tags: ftbfs >User: debian-pyt...@lists.debian.org >Usertags: python3.12 > >Hi Maintainer > >This package has dependencies,

Bug#1065203: regression: TypeError: find_username() missing 1 required positional argument: 'ssh_conf'

2024-03-01 Thread Yaroslav Halchenko
Package: dput-ng Version: 1.38~bpo12+1 Severity: important Used to work fine, today started to fail: ❯ dput neurosmaug git-annex_10.20240227-1~ndall+1_source.changes Uploading git-annex using scp to neurosmaug (host: neurosmaug; directory: /home/neurodebian/deb/builds/ndbuild)

Bug#1014890: RFP: python3-looseversion -- Version numbering for anarchists and software realists

2024-01-03 Thread Yaroslav Halchenko
AFAIK nope -- feel welcome to finish it up and upload. Then you can make it follow the desired naming ;) On Wed, 03 Jan 2024, Mike Gabriel wrote: > Has there been any progress on uploading python3-looseversion to unstable, > recently? (I'd suggest naming the src:pkg python-looseversion,

Bug#1059247: stressant: crashes not finding /usr/share/doc/fio/examples/basic-verify.fio

2023-12-21 Thread Yaroslav Halchenko
Package: stressant Version: 0.7.0 Severity: important X-Debbugs-Cc: deb...@onerussian.com Dear Maintainer, Decided to try stressant on a freshly installed debian box. But it crashed with yoh@reproiner:~$ stressant --cpu ... INFO: Disk stress test Traceback (most

Bug#861635: any hope for et to get to debian?

2023-11-03 Thread Yaroslav Halchenko
didn't check if PPA upstream promotes a good start Re Jason's > Also why is this changed to RFP? because it had been over a year without package materializing, thus it is more of RFP than ITP. -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org

Bug#946244: pretty please

2023-10-19 Thread Yaroslav Halchenko
Current versions is way too old. -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 WWW: http://www.linkedin.com/in/yarik

Bug#1031781: neurodebian-popcon.gpg'

2023-09-01 Thread Yaroslav Halchenko
Sorry for the delay. Somehow I even didn't get any message on this bug report being filed ... odd On Mon, 20 Feb 2023, Yaroslav Halchenko wrote: > > How do I get rid of this message? > apt-get install neurodebian-archive-keyring > ? > Let me know how it goes... I will look

Bug#1050471: ITS: impose+

2023-08-25 Thread Yaroslav Halchenko
no objections! On Thu, 24 Aug 2023, Bastian Germann wrote: > Source: impose+ > Severity: important > impose+ does not seem to be maintained anymore. I intend to salvage it with > the plan to orphan it in three weeks. Please notify me if you object. -- Yaroslav O. Halchenko Center for Open

Bug#1028157: cython update

2023-08-11 Thread Yaroslav Halchenko
On Fri, 11 Aug 2023, Drew Parsons wrote: > ... > > But in any case PR18242 looks simple enough to backport to scipy 1.10.1 . > Would need to be tested first. Get cython3 into experimental so we can > check. Dear Stefano, would you have time for such an endeavor? would be great and highly

Bug#1028157: cython update

2023-08-10 Thread Yaroslav Halchenko
Hi Nilson sorry -- I was not following cython package recently so all kudos to Stefano and other team members for taking good care of it under team maintainership. I think the best would have been to check existing bug reports and follow up on them, thus to minimize traffic I immediately CCing

Bug#1014890: ITP: python3-looseversion -- Version numbering for anarchists and software realists

2023-06-19 Thread Yaroslav Halchenko
Thank you Alban, done -- join/finish up https://salsa.debian.org/python-team/packages/python-looseversion please On Mon, 19 Jun 2023, Alban Browaeys wrote: > on January 4th of 2023 you retitled this RFP to ITP. > > ITP: python3-looseversion -- Version numbering for anarchists and > software

Bug#999526: Taking over package into Debian Python Team maintenance and fixing bug (Was: mdp: FTBFS with numpy 1.21 (in experimental): dh_auto_test: error: pybuild --test --test-pytest -i python{versi

2023-04-17 Thread Yaroslav Halchenko
Hi Andreas, Thank you very much for offering help. I think Tiziano would not mind, so please feel very welcome to a) for the sake of b) or any other goodness you would like to bring ;) Note though that MDP is pretty much inactive project since a few years back. It seems it is still used by

Bug#1031803: in `request': undefined method `escape' for URI:Module (NoMethodError)

2023-02-22 Thread Yaroslav Halchenko
Package: ghi Version: 1.2.0-1.1 Severity: normal I just installed it since just now discovered, and at the first invocation got a crash, so not sure how usable it is: ❯ ghi list zsh: correct 'ghi' to 'gih' [nyae]? n # NeurodataWithoutBorders/nwb-schema open issues

Bug#787277: running into the same with bullseye -> bookworm upgrade

2023-02-18 Thread Yaroslav Halchenko
Happened to me on a new server I received from a vendor with bullseye preinstalled so I don't know exactly if they didn't mess with password there but very unlikely they did. Upon upgrade to bookworm got those persisting errors root@typhon:~# apt-get -f install Reading package lists...

Bug#1026232: RFP: label-studio -- multi-type data labeling and annotation tool with standardized output format

2022-12-16 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: label-studio Version : 1.7.0 Upstream Author : Heartexlabs * URL : https://github.com/heartexlabs/label-studio * License : Apache 2.0 Programming Lang: Python Description : multi-type data labeling and

Bug#1021619: RFP: python3-lazy-loader -- load subpackages and functions on demand

2022-10-11 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist X-Debbugs-Cc: debian-pyt...@lists.debian.org * Package name: python3-lazy-loader Version : 0.1 Upstream Author : Jarrod Millman * URL : https://github.com/scientific-python/lazy_loader * License : BSD-3 Programming Lang:

Bug#1015102: heudiconv: FTBFS: FAILED heudiconv/tests/test_heuristics.py::test_reproin_largely_smoke[--files /<>/.pybuild/cpython3_3.10_heudiconv/build/heudiconv/tests/data-reproin]

2022-09-29 Thread Yaroslav Halchenko
oh, sorry about that and thanks for the ping! I fixed it upstream already (the bug is really in datalad), and will look to release it asap (i.e. now) and then see if we can update package (might need to also upload new version of dcmstack first) On Thu, 29 Sep 2022, Nilesh Patra wrote: > Hi

Bug#892664: my use case. Petition to have zst support in dpkg

2022-09-28 Thread Yaroslav Halchenko
We build both debian and ubuntu backports for http://neuro.debian.net/ . And then we use https://snapshot.debian.org/ engine to provide snapshots over our archive, which we run in a Debian environment. Unfortunately dpkg-deb used by snapshot pukes on Ubuntu packages due to "unknown compression for

Bug#720723: Please do not compress .vym files

2022-09-13 Thread Yaroslav Halchenko
Package: vym Version: 2.6.11-3+b2 Followup-For: Bug #720723 Just ran into this 9 yo issue. Should be easy to fix by excluding .vym from being compressed by dh_compress -- System Information: Debian Release: bookworm/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'),

Bug#1018335: datalad-container: build-depends on python3-nose or uses it for autopkgtest

2022-08-29 Thread Yaroslav Halchenko
FWIW -- I was wrong (got lost in datalad extensions). -container is not yet migrated to pytest but will be shortly! On Mon, 29 Aug 2022, Yaroslav Halchenko wrote: > Next upload will have it using pytest -- we have migrated to pytest > recently upstream > Cheers, -- Yaroslav O.

Bug#1018335: datalad-container: build-depends on python3-nose or uses it for autopkgtest

2022-08-29 Thread Yaroslav Halchenko
Next upload will have it using pytest -- we have migrated to pytest recently upstream Cheers, On Sun, 28 Aug 2022, Dmitry Shachnev wrote: > Source: datalad-container > Version: 1.1.6-0.1 > User: python-modules-t...@lists.alioth.debian.org > Usertags: nose-rm > Dear Maintainer, > Your package

Bug#1014890: RFP: python3-looseversion -- Version numbering for anarchists and software realists

2022-07-13 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist X-Debbugs-Cc: debian-pyt...@lists.debian.org * Package name: python3-looseversion Version : 1.0.1 Upstream Author : Chris Markiewicz * URL : https://github.com/effigies/looseversion * License : Python Programming Lang: Python

Bug#1009381: datalad-container: diff for NMU version 1.1.6-0.1

2022-05-26 Thread Yaroslav Halchenko
THANK YOU Adrian! Apparently I have forgotten to upload updated debian package after all those now automated bugfix releases in datalad-container... I will do that now, and if I fail -- your NMU would proudly solve the issue -- no need to cancel. On Thu, 26 May 2022, Adrian Bunk wrote: >

Bug#1010941: python-argcomplete salvaging and possible team (re)join

2022-05-13 Thread Yaroslav Halchenko
omplete (1.12.3-0.2) unstable; urgency=medium + + * Non-maintainer upload. + * debian/rules +- provide workaround for tests to not fail (Closes: #1010941). + Upstream issue: https://github.com/kislyuk/argcomplete/issues/337 + + -- Yaroslav Halchenko Fri, 13 May 2022 13:07:30 -0400 +

Bug#1010941: FTBFS due to tests 56 tests failing

2022-05-13 Thread Yaroslav Halchenko
Package: python3-argcomplete Version: 1.12.3-0.1 Severity: serious Tags: ftbfs Justification: fails to build from source Wanted to build a backport but failed to have it built even in current sid. A complete log is at http://www.onerussian.com/tmp/python-argcomplete_1.12.3-0.1_amd64.build and

Bug#1010897: ITP: python3-versioningit -- PEP 518 driven setuptools plugin for auto-versioning using git/hg

2022-05-12 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist Owner: Yaroslav Halchenko X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: python3-versioningit Version : 1.1.1 Upstream Author : John T. Wodder II * URL : https://github.com/jwodder/versioningit * License : MIT

Bug#1010168: RFP: python3-pytest-fail-slow -- pytest plugin for making tests fail that take too long to run

2022-04-25 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist X-Debbugs-Cc: debian-pyt...@lists.debian.org * Package name: python3-pytest-fail-slow Version : 0.1.0 Upstream Author : John Thorvald Wodder II * URL : https://github.com/jwodder/pytest-fail-slow/ * License : MIT/X

Bug#1009985: RFP: memray -- memory profiler for Python

2022-04-21 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist X-Debbugs-Cc: debian-pyt...@lists.debian.org * Package name: memray Version : 1.0.3 Upstream Author : Bloomberg LP * URL : https://github.com/bloomberg/memray * License : Apache 2.0 Programming Lang: Python Description :

Bug#1006909: impressive: Fails to find any pages in the presentation

2022-03-21 Thread Yaroslav Halchenko
On Tue, 15 Mar 2022, Martin Fiedler wrote: > Hi Gunnar, > > Hmmm... But please do take note that I _did_ have mupdf-tools > > installed when Impressive failed to analyze the PDF > > document. > Did you though? Impressive detected "Poppler/Xpdf" as the renderer, > which is an indicator of the

Bug#1006909: impressive: Fails to find any pages in the presentation

2022-03-15 Thread Yaroslav Halchenko
Thank you Gunnar. Dear Martin, Please refresh my mind -- is pdftk a strict requirement now for impressive or should still be optional, whenever mupdf-tools (>= 1.5) | poppler-utils would be the tools to require? Gunnar reports that without pdftk he had no luck seeing a presentation.

Bug#995171: need newer release

2022-01-25 Thread Yaroslav Halchenko
> I can't see this in master branch. > > I have started to update packaging for 3.9.4+ds1 but got stuck on > > updating the 2nd patch which seems "too involved" for a go-ignorant me. > > Any help would be welcomed. I have pushed update of source tree etc > To what branch? oh, I didn't spot

Bug#995171: need newer release

2022-01-24 Thread Yaroslav Halchenko
On Mon, 24 Jan 2022, Andreas Tille wrote: > $ apt showsrc singularity-container | grep Uploaders > Uploaders: Dave Love , Mehdi Dogguy , > Yaroslav Halchenko , Afif Elghraoui , > Dmitry Smirnov , Benda Xu > shows you as Uploader of singularity-container. Is there any re

Bug#1003290: ITP: mricrogl -- magnetic resonance image conversion, viewing and analysis

2022-01-07 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist Owner: Yaroslav Halchenko X-Debbugs-Cc: debian-de...@lists.debian.org, Debian Med Packaging Team * Package name: mricrogl Version : 1.2.20211006 Upstream Author : Chris Rorden * URL : https://github.com/rordenlab/MRIcroGL * License

Bug#937209: openopt: Python2 removal in sid/bullseye

2021-10-06 Thread Yaroslav Halchenko
> openopt seems dead upstream and has been dropped from testing for almost > two years, let's remove it? sounds good to me -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 WWW:

Bug#995171: need newer release

2021-09-27 Thread Yaroslav Halchenko
Package: singularity-container Version: 3.5.2+ds1-1 Severity: normal Current upstream release is 3.8.3 https://github.com/sylabs/singularity/releases/tag/v3.8.3 I expect it having addressed a number (if not all) CVE issues we have opened in debian against the package. For thta reason marking

Bug#993970: RFP: python3-pathvalidate -- Python library to sanitize/validate a string such as filenames/file-paths/etc

2021-09-08 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist X-Debbugs-Cc: python-modules-t...@lists.alioth.debian.org * Package name: python3-pathvalidate Version : 2.4.1 Upstream Author : https://github.com/thombashi * URL : https://github.com/thombashi/pathvalidate * License : MIT/X

Bug#988420: Please provide newer upstream (2.8.1 ATM)

2021-05-12 Thread Yaroslav Halchenko
Package: python3-zarr Version: 2.6.1+ds-1 Severity: wishlist Otherwise I get (git)lena:~/proj/misc/ome-zarr-py[master]git $> ome_zarr info http://dandiarchive.s3.amazonaws.com/largeuploads/blobs/150slab.zarr/ ERROR:ome_zarr.cli:not a zarr: None whenever using ome-zarr

Bug#895055: ITP: python-sounddevice -- Python module to play and record sound

2021-03-09 Thread Yaroslav Halchenko
retitle -1 RFP: python3-sounddevice -- Python module to play and record sounds thanks thanks On Tue, 09 Mar 2021, Paul Menzel wrote: > I also found an application requiring this Python library. > The current version is 0.4.1 and probably the name now should be > python3-sounddevice. Thanks

Bug#983883: newer (patch) upstream release (0.8.7) is available

2021-03-04 Thread Yaroslav Halchenko
On Thu, 04 Mar 2021, Emmanuel Arias wrote: >Hi Yaroslav, >Thanks for the report. >After a quick diff between tags, I can show that isn't a new >patch version.  >If I'm not wrong there're some new implementations. So, if you're ok I  It isfine with me -- I am still exploring

Bug#983883: newer (patch) upstream release (0.8.7) is available

2021-03-02 Thread Yaroslav Halchenko
Package: python3-fsspec Version: 0.8.4-1 Severity: wishlist Since patch release, I expect that it is largely if not only bugfixes, so may be still could get into bullseye? unfortunately the only changelog I found https://github.com/intake/filesystem_spec/blob/master/docs/source/changelog.rst is

Bug#982050: There are fresh upstream releases (8.9.11 ATM) which address security and other issues

2021-02-19 Thread Yaroslav Halchenko
There are updated packages floating around... BCCing someone who might facilitate pinging etc. I bet if changes pushed somewhere, should be easy to get updated package finalized etc On Fri, 19 Feb 2021, Diane Trout wrote: > I had been wondering if the htcondor package is effectively orphaned. >

Bug#980967: closed by Debian FTP Masters (reply to Yaroslav Halchenko ) (Bug#980967: fixed in bats 1.2.1-2)

2021-02-15 Thread Yaroslav Halchenko
On Mon, 15 Feb 2021, Paul Gevers wrote: > Hi Yaroslav, > On 15-02-2021 05:51, Debian Bug Tracking System wrote: > > bats (1.2.1-2) unstable; urgency=medium > > . > >* debian/patches > > - adopted patch from https://github.com/bats-core/bats-core/pull/387 to > >resolve

Bug#978257: pynwb is marked for autoremoval from testing

2021-02-14 Thread Yaroslav Halchenko
failed to arrive with working minimal patch against that elderly 1.2.1 FWIW built current snapshot which seems to be ok. but I am reluctant to upload that one since it has breaking (we have no rev-depends though in debian ATM) changes. On Sun, 14 Feb 2021, Andreas Tille wrote: > Hi Yaroslav,

Bug#982120: heudiconv still depends on python

2021-02-06 Thread Yaroslav Halchenko
Thanks, on it. also needs a patch now for datalad 0.14 deprecation On Sat, 06 Feb 2021, Adrian Bunk wrote: > Package: heudiconv > Version: 0.9.0-1 > Severity: serious > This looks like a forgotten conversion: > https://sources.debian.org/src/heudiconv/0.9.0-1/debian/control/#L28 -- Yaroslav

Bug#982119: dcmstack: autopkgtest failure

2021-02-06 Thread Yaroslav Halchenko
Thanks! Test building and will upload if all good with $> git show commit e9f88704d2fd8bf5f0053904222e66dcc69db621 (HEAD -> debian, tag: debian/0.8-2) Author: Yaroslav Halchenko Date: Sat Feb 6 12:29:39 2021 -0500 Replace nosetests-3 with python3 -m nose for autopkgtest invo

Bug#982050: There are fresh upstream releases (8.9.11 ATM) which address security and other issues

2021-02-05 Thread Yaroslav Halchenko
Package: htcondor Version: 8.6.8~dfsg.1-2 Severity: normal 8.6.8~dfsg.1-1 was uploaded over 3 years ago. Since then multiple upstream releases were made, possibly (didn't check) addressing CVE of Bugs with severity grave 1) #963777 condor: CVE-2019-18823 and possibly Bugs with severity

Bug#980779: incompatible with python 3.9 - syntax error

2021-01-21 Thread Yaroslav Halchenko
Package: python3-uritemplate Version: 0.6-4 Severity: important Got following exception with python3.9 (now default for python3) while trying to run the tests for our code where we react to deprecation warnings etc ... venvs/dev3/lib/python3.9/site-packages/pyout/__init__.py:10: in

Bug#975166: connectome-workbench: FTBFS: qwt_painter_command.h:85:22: error: field ‘clipPath’ has incomplete type ‘QPainterPath

2021-01-13 Thread Yaroslav Halchenko
Great, thanks for the info and the buzz -- missed this, will try now and upload if all good. Cheers, On Wed, 13 Jan 2021, s3v wrote: > Dear Maintainer, > I tried to build your package in a sid chroot environment > and I confirm that patch fixes this issue. > Kind Regards -- Yaroslav O.

Bug#979469: missing dependency on (surprise!) golang-docker-credential-helpers, renders basic "pull" non-functional

2021-01-06 Thread Yaroslav Halchenko
Package: python3-docker Version: 4.1.0-1.2 Severity: important "minimal" example: $> python3 -c 'import docker as d; c = d.from_env(); c.images.pull("debian:latest")' Traceback (most recent call last): File "", line 1, in File

Bug#932197: Bug#937144: Request to join the Neurodebian group

2020-12-12 Thread Yaroslav Halchenko
On Thu, 30 Apr 2020, Moritz Mühlenhoff wrote: > > Thanks for the hint. While this could possibly speet up the upload of > > nipype I for myself are fine with waiting for the new Build-Depends. > > Anybody who wants to speed up things is kindly invited to add this patch > > and upload. >

Bug#959138: Error in build time tests (Was: numpy breaks nipy autopkgtest: No module named 'numpy.testing.decorators')

2020-12-08 Thread Yaroslav Halchenko
FWIW those were reported "upstream" https://github.com/nipy/nipy/issues/466 unfortunately I had no time to look at them (again :-/) On Tue, 08 Dec 2020, Andreas Tille wrote: > Control: tags -1 pending > Control: tags -1 help > Hi, > I've updated nipy Git[1] to version 0.4.3~rc1 which solves

Bug#976325: [ans...@debian.org: Bug#976325: src:libgdf: invalid maintainer address]

2020-12-03 Thread Yaroslav Halchenko
On Thu, 03 Dec 2020, Rafael Laboissière wrote: > Dear Yaroslav and Michael, > Are you aware of the problem related in Bug#976325, regarding the email > address t...@neuro.debian.net? thanks Rafael. I think that elderly mail server didn't re-emerge from the dead upon recent power outage. I

Bug#972166: Rising severities

2020-10-25 Thread Yaroslav Halchenko
Feel welcome to NMU without delay. Sorry for being slow etc. Thank you! On Sun, 25 Oct 2020, Lisandro Damián Nicanor Pérez Meyer wrote: > severity 972163 serious > severity 972166 serious > block 972176 by 972163 > block 972176 by 972166 > thanks > Hi! We are close to begin the Qt transition

Bug#972537: please add --enable-ros3-vfd to the build options to allow RO access to HDF5 on S3

2020-10-19 Thread Yaroslav Halchenko
Source: hdf5 Version: 1.12.0+repack-1~exp2 Severity: wishlist Overall patch below worked for me now now hdf5 tools work with ros3 driver, e.g. $> h5ls -r --vfd=ros3 https://dandiarchive.s3.amazonaws.com/girder-assetstore/6a/2f/6a2fe9e83746474790c504b9c8abb3ae /

Bug#970895: duecredit: new upstream release available

2020-09-25 Thread Yaroslav Halchenko
On Fri, 25 Sep 2020, Yaroslav Halchenko wrote: > I see that in april of this year I looked into updating the package, it > needed rnc2rng. I have packaged it. And it is in Debian now: > python3-rnc2rng FTR, uploaded rnc2rng 2.6.4 and now waiting for it to appear since citeproc 0.

Bug#970895: duecredit: new upstream release available

2020-09-25 Thread Yaroslav Halchenko
On Fri, 25 Sep 2020, Drew Parsons wrote: > Source: duecredit > Severity: normal > I'm getting problems running tests for mdanalysis with some broken > citations generated by duecredit, > see https://github.com/MDAnalysis/mdanalysis/issues/2954 yikes, thanks for letting me know followed up -

Bug#970815: provide .desktop file so fstl could be added as an application to open files in Files GUI

2020-09-23 Thread Yaroslav Halchenko
Package: fstl Version: 0.9.3-1+b1 Severity: wishlist Subject Thanks! ;) -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100, 'unstable-debug'), (100, 'stable-updates'), (100, 'stable')

Bug#969908: a number of more recent releases (with MANY bug fixes) are available

2020-09-08 Thread Yaroslav Halchenko
Source: git-annex Version: 8.20200330-1 Severity: normal There were a number of releases since then: 8.20200330 8.20200501 8.20200522 8.20200617 8.20200720 8.20200720.1 8.20200810 many of those brought up fixes to many aspects of git-annex. ATM in datalad we ran into an issue with custom

Bug#969034: Please drop last sentence from description

2020-08-26 Thread Yaroslav Halchenko
Control: tags -1 pending pushed http://github.com/datalad/datalad/commit/d42acef188ef7dbba90e7c4acbd0a07433f428cc On Wed, 26 Aug 2020, David Prévot wrote: > Package: datalad > Severity: minor > Hi, > Thanks for packaging this tool I just discovered via DebConf20. > The description ends with

Bug#968290: please update to 3.37.90 upstream (SIXEL support added)

2020-08-12 Thread Yaroslav Halchenko
Package: gnome-terminal Version: 3.36.2-1 Severity: wishlist There are some really cool apps which make use of SIXEL. Some terminals (e.g. xterm) already have support for it. gnome-terminal only (very recently! apparently) recently added support for it in 3.37.90. $> git show 3.37.90

Bug#937090: mrtrix: Python2 removal in sid/bullseye

2020-07-26 Thread Yaroslav Halchenko
Sorry about delay. Yes, mrtrix3 is Afaik the way to go. Please file RM On July 26, 2020 7:20:03 AM EDT, "Moritz Mühlenhoff" wrote: >On Fri, Jul 10, 2020 at 01:07:27PM +0200, Andreas Tille wrote: >> Hi Moritz, >> >> On Tue, Jun 30, 2020 at 08:14:15PM +0200, Moritz Mühlenhoff wrote: >> > >> >

Bug#964650: pydicom: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13

2020-07-17 Thread Yaroslav Halchenko
On Fri, 17 Jul 2020, Andreas Tille wrote: > Control: tags -1 help > Hi, > the new upstream version I've just pushed to git solves the issue thanks! > that is reported here, but I'm running into a different issue: >TypeError: data type 'uint15' not understood I do not understand it

Bug#963548: 83.0.4103.116-1 too risky

2020-07-02 Thread Yaroslav Halchenko
FWIW, I see that ffmpeg is the one providing libswscale5 . Two days ago when I upgraded it to 4.3-2 obs-studio started to crash on the following image: http://www.onerussian.com/tmp/panic_room_crash_libswscale5.jpg full url to traceback there http://www.onerussian.com/tmp/obs-segfault1.txt I now

Bug#938605: svgtune: Python2 removal in sid/bullseye - reopen 938605

2020-06-20 Thread Yaroslav Halchenko
Old python ones are listed only as alternative dependencies to easy backports for ancient systems. https://packages.debian.org/sid/svgtune I don't think this package holds any python removal On June 20, 2020 12:49:59 AM EDT, Sandro Tosi wrote: >Control: reopen -1 > >This bug was closed, but

Bug#937485: pymvpa2: Python2 removal in sid/bullseye

2020-06-13 Thread Yaroslav Halchenko
As the upstream and Debian maintainer for it, I am ok with it. It could be easily made to build for python 3 but tests would show that it is not entirely kosher. I better reupload it when it i an sure it is functioning correctly again On June 13, 2020 1:16:58 PM EDT, "Moritz Mühlenhoff" wrote:

Bug#954444: fresh release availability would be appreciated

2020-05-31 Thread Yaroslav Halchenko
Package: neomutt Version: 20191207+dfsg.1-1.1 Followup-For: Bug #95 Just discovered neomutt for myself, thought to try, but it pukes on my muttrc configuration. Before investigating and complaining want to make sure to try most recent release. Thank you in advance! -- Package-specific

Bug#961896: nuitka: Please make another source-only upload to allow testing migration

2020-05-30 Thread Yaroslav Halchenko
Thanks for the buzz! I really need to change my helper for uploads process to make sure they are source only ones by default. I will wait for the upstream Kay who is also the maintainer :-) - a new release might be not too far away. On May 30, 2020 9:38:57 PM EDT, Boyuan Yang wrote: >Source:

Bug#961721: please update to more recent upstream release (1.27.2)

2020-05-28 Thread Yaroslav Halchenko
Package: recoll Version: 1.26.7-1 Severity: wishlist seems no rush, majority of fixes seems to be windows related: https://www.lesbonscomptes.com/recoll/pages/release-1.27.html -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (900, 'testing'), (600,

Bug#910108: RFP: git-bug -- Distributed bug tracker embedded in Git

2020-05-22 Thread Yaroslav Halchenko
I would have loved to see this one in debian as well! May be someone from Debian Go Team could have paved the way On Tue, 02 Oct 2018, Antoine Beaupre wrote: > Package: wnpp > Severity: wishlist > * Package name: git-bug > Version : 0.3.0 > Upstream Author : Michael Muré > *

Bug#961051: the 3.0 release is finally out!

2020-05-19 Thread Yaroslav Halchenko
Source: mrtrix3 Version: 3.0~rc3+git135-g2b8e7d0c2-5 Severity: wishlist https://www.mrtrix.org/2020/04/23/mrtrix-3-0-0-has-arrived/ Thank you Team in advance! -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300,

Bug#927076: Prelim Packaging

2020-05-15 Thread Yaroslav Halchenko
On Mon, 20 Jan 2020, Barak A. Pearlmutter wrote: > I have a tentative packaging in the debian branch of > github.com/barak/xournalpp and unless there are any objections or > issues arising, plan to upload it in due course. Please please please proceed ;) -- Yaroslav O. Halchenko Center for

Bug#945739: symeig - RM?

2020-05-13 Thread Yaroslav Halchenko
all' instead of 'any' * Boosted policy to 3.8.3: - -dbg got correct "section: debug" and "priority: extra" -- Yaroslav Halchenko Mon, 16 Nov 2009 08:55:44 -0500 so indeed it is time for it to RiP ;) please RM On Wed, 13 May 2020, Sco

Bug#960464: RFP: datajoint -- a framework for scientific workflow management based on relational principles

2020-05-12 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: datajoint-python Version : 0.12.5 Upstream Author : DataJoint team * URL : https://github.com/datajoint/datajoint-python * License : LGPL-2 Programming Lang: Python Description : a framework for

Bug#959940: hdmf FTBFS with h5py 2.10.0

2020-05-09 Thread Yaroslav Halchenko
Package: python3-h5py Version: 2.10.0-7 Followup-For: Bug #959940 Please see https://github.com/hdmf-dev/hdmf/issues/343#issuecomment-625972582 for possibly more info: @tillea @yarikoptic the debian port contains this code in h5py_2.10.0-7.debian/debian/wrapper_module/h5py/__init__.py

Bug#959911: python3.7: No module named '_cffi_backend'

2020-05-06 Thread Yaroslav Halchenko
Package: python3-cryptography Version: 2.8-4 Severity: important I am not sure if it is more pertinent to python3-cffi or one of its packages. I am still using python3.7 which is AFAIK still supported on sid. But with it, it fails to import (using it via keyrings module): $> docker run

Bug#959725: RM: svgtune -- RoQA; Inactive Upstream; Unmaintained; Affected by Python2 Removal

2020-05-04 Thread Yaroslav Halchenko
Please hold off on removal... I will update the package for python3 On Mon, 04 May 2020, Boyuan Yang wrote: > Package: ftp.debian.org > Severity: normal > User: ftp.debian@packages.debian.org > Usertags: remove > X-Debbugs-CC: deb...@onerussian.com y...@debian.org > Dear FTP Masters, > As

Bug#959575: neurodebian: FTBFS: (process:15028): WARNING **: 05:07:11.653: Unable to create profile directory (Permission denied) (13)

2020-05-04 Thread Yaroslav Halchenko
On Sun, 03 May 2020, Lucas Nussbaum wrote: > > [ ! -d build/icons ] && mkdir -p build/icons > > inkscape artwork/icon.svg -w 32 -h 32 \ > > -e build/icons/neurodebian.png > > ** (process:15028): WARNING **: 05:07:11.653: Unable to create profile > > directory (Permission denied) (13) > >

Bug#937431: pyepl: Python2 removal in sid/bullseye

2020-04-30 Thread Yaroslav Halchenko
> > yes, AFAIK it is dead. Let's RM. you ? me ? ;) > Please go ahead :-) FTR #959213 -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834

Bug#959213: RM: pyepl -- ROM; dead upstream, not guaranteed python3 compatibility

2020-04-30 Thread Yaroslav Halchenko
Package: ftp.debian.org Severity: normal all said in the subject line. Upstream CCed just in case ;-)

Bug#932197: Bug#937144: Request to join the Neurodebian group

2020-04-30 Thread Yaroslav Halchenko
On Thu, 30 Apr 2020, Moritz Mühlenhoff wrote: > On Wed, Feb 26, 2020 at 04:15:03PM +0100, Andreas Tille wrote: > > On Wed, Feb 26, 2020 at 08:37:30AM -0500, Yaroslav Halchenko wrote: > > > thank you Andreas!!! > > > re etelemetry: I made it optional for previous v

Bug#959205: fresh (13 days old) 5.0.0 release is out, will be needed for nipype

2020-04-30 Thread Yaroslav Halchenko
Package: python3-rdflib Version: 4.2.2-5 Severity: wishlist https://github.com/RDFLib/rdflib/releases and nipype introduced 5.0.0 as minimal dependency: https://github.com/nipy/nipype/pull/3154/files#diff-652049a763b24d096b8211ef8d633748R113 it would be great if 5.0.0 was uploaded to Debian

Bug#937431: pyepl: Python2 removal in sid/bullseye

2020-04-30 Thread Yaroslav Halchenko
On Thu, 30 Apr 2020, Moritz Mühlenhoff wrote: > On Fri, Aug 30, 2019 at 07:33:35AM +, Matthias Klose wrote: > > Package: src:pyepl > > Version: 1.1.0+git12-g365f8e3-3 > > Severity: normal > > Tags: sid bullseye > > User: debian-pyt...@lists.debian.org > > Usertags: py2removal > > Python2

Bug#936857: libfreenect: diff for version 1:0.5.3-2

2020-04-09 Thread Yaroslav Halchenko
Thanks for the alert, FWIW, done now: (git)lena:~exppsy/libfreenect[debian]git $> gbp push salsa gbp:info: Pushing debian/1%0.5.3-1 to salsa gbp:info: Pushing upstream/0.5.3 to salsa gbp:info: Pushing refs/heads/debian to salsa:refs/heads/debian gbp:info: Pushing refs/heads/dfsg to

Bug#936857: libfreenect: diff for version 1:0.5.3-2

2020-04-09 Thread Yaroslav Halchenko
On Thu, 09 Apr 2020, Sandro Tosi wrote: > Control: tags 936857 + patch > Dear maintainer, > I've prepared an upload for libfreenect (versioned as 1:0.5.3-2). The diff > is attached to this message. Thank you Sandro! -- Yaroslav O. Halchenko Center for Open Neuroscience

Bug#942936: datalad-container: diff for NMU version 1.0.0-1.1

2020-03-29 Thread Yaroslav Halchenko
d'oh -- missed that one, thank you Sando, I will apply the patch and upload as -2. Cheers, On Sun, 29 Mar 2020, Sandro Tosi wrote: > Control: tags 942936 + patch > Dear maintainer, > I've prepared an NMU for datalad-container (versioned as 1.0.0-1.1). The diff > is attached to this message.

Bug#954579: datalad-container: FTBFS: build-dependency not installable: datalad (>= 0.11.5~)

2020-03-22 Thread Yaroslav Halchenko
On Sun, 22 Mar 2020, Lucas Nussbaum wrote: > Source: datalad-container > Version: 0.5.0-1 Thank you for the report. 1.0.0-1 was built but forgotten to be uploaded at the end of Feb. Now it would need to wait until datalad 0.12.4 is uploaded first which would resolve incompatibilities with

Bug#942615: no-changes source-only NMU

2020-03-06 Thread Yaroslav Halchenko
On Fri, 06 Mar 2020, Paul Gevers wrote: > Control: tags -1 pending > Dear maintainer, > I have uploaded a no-changes source only version to DELAYED/15. Please > tell me if I should delay or cancel the upload. oh, I have missed that https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=942615 and

Bug#951982: fixed upstream

2020-03-02 Thread Yaroslav Halchenko
FWIW, this issue should be fully addressed in recent releases. in Debian we have 4.30.0-1, upstream release is v4.43.0, and this issue was fixed in https://github.com/tqdm/tqdm/commit/0fcf9ed4c191fa224afd5581ac1a47b2cf80bc54#diff-79a0b30dff238cd3aa6b9f8e665a57a0 pandas: support v1.0.0 (so even

Bug#932197: Bug#937144: Request to join the Neurodebian group

2020-02-26 Thread Yaroslav Halchenko
thank you Andreas!!! re etelemetry: I made it optional for previous version of the package: $> quilt series deb-no-demand-on-etelemetry $> git describe debian/0.6.0-1 On Tue, 25 Feb 2020, Andreas Tille wrote: > Hi, > here is some update I'm also forwarding

Bug#869237: I would have loved to see it in debian as well

2020-02-24 Thread Yaroslav Halchenko
oh, apparently it survived in ubuntu land: https://launchpad.net/ubuntu/+source/oprofile/1.3.0-0ubuntu9 On Mon, 24 Feb 2020, Yaroslav Halchenko wrote: > Just +1 on having this package in Debian ;) -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.

Bug#869237: I would have loved to see it in debian as well

2020-02-24 Thread Yaroslav Halchenko
Just +1 on having this package in Debian ;) -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW:

Bug#937249: closed by Abhijith PA (Bug#937249: fixed in patool 1.12-4)

2020-02-12 Thread Yaroslav Halchenko
On Thu, 06 Feb 2020, Yaroslav Halchenko wrote: > On Wed, 15 Jan 2020, Abhijith PA wrote: > > Hi Adrian, > > On 15/01/20 5:47 pm, Adrian Bunk wrote: > > > On Tue, Dec 17, 2019 at 03:21:07PM +, Debian Bug Tracking System > > > wrote: > > >> ... &

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