Le Mon, Sep 28, 2009 at 07:07:28AM +, Andreas Tille a écrit :
> -mafft (6.240-3) UNRELEASED; urgency=low
> +mafft (6.713-1) UNRELEASED; urgency=low
Hi Andreas,
many thanks for your help on upgrading the packages, I got quite dispersed
those days and did not find time for some of them.
In the
Hi Charles!
Am Montag, den 28.09.2009, 16:40 +0900 schrieb Charles Plessy:
> In the case of Mafft, we definitely want the ‘without-extensions’ version, as
> the extensions are non-free. I do not know how to treat this case, but maybe
> the best way to let our users know that we use only the free p
Hi mitchell,
Sorry to hear your misfortune with ctn. did you report any of the bugs you
mentionned ? Are they easily reproducable ?
Thanks,
On Thu, Sep 24, 2009 at 3:38 PM, m laks wrote:
Mathieu,
I am a great fan of debian (i use it on over 50 pcs in my department and home
and my parents a
On Mon, Sep 28, 2009 at 10:33:47AM +0200, Manuel Prinz wrote:
> Am Montag, den 28.09.2009, 16:40 +0900 schrieb Charles Plessy:
> > In the case of Mafft, we definitely want the ???without-extensions???
> > version, as
> > the extensions are non-free. I do not know how to treat this case, but maybe
Hello,
Andreas Tille wrote:
> On Sat, Sep 26, 2009 at 07:51:13PM +0200, Steffen Moeller wrote:
>> I have just prepared a bootable USB stick with
>
> You "just prepared", but the files in SVN
> (community/infrastructure/livecd) are dated from November last year.
> Would you mind commiting your wor
Hello,
Andreas Tille wrote:
> I intend to update the Debian package of infernal to the newest stable
> version (1.0). I just noticed that it contains a copy of libeazel. I
> became curious about this library because it looked rather like a
> separate piece of code. My research enedet up in ano
On Mon, Sep 28, 2009 at 01:27:43PM +0200, Steffen Moeller wrote:
> > You "just prepared", but the files in SVN
> > (community/infrastructure/livecd) are dated from November last year.
> > Would you mind commiting your work?
>
> now that I learned more, I perceive more needs for discussing about wh
On Mon, Sep 28, 2009 at 01:34:08PM +0200, Steffen Moeller wrote:
> It seems like a good idea to have those pieces as separate libraries. The
> drive
> towards it should come from upstream, though, not from us.
Sure. That's why I putted upstream in CC. IMHO the interest of
upstream in consolidat
Steve,
Did you try with python-numpy ? If this did not worked did you keep
the build log ?
Thanks,
On Sat, Sep 26, 2009 at 7:08 PM, Steven Michael Robbins
wrote:
> Author: smr
> Date: 2009-09-26 17:08:46 + (Sat, 26 Sep 2009)
> New Revision: 4040
>
> Modified:
> trunk/packages/insighttoo
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: bwa
Version : 0.5.3
Upstream Author : Heng Li and others, see:
http://bio-bwa.sourceforge.net/bwa.shtml
URL : http://bio-bwa.sourceforge.net
License : GPL
Programming Lang: C
Descri
Andreas Tille wrote:
> On Mon, Sep 28, 2009 at 01:34:08PM +0200, Steffen Moeller wrote:
...
>
>> We should
>> nonetheless prepare for it. I could imagine that both the HMMER and the
>> Infernal packages offer a binary package libeazel-hmmer/libeazel-infernal and
>> that these are given the tag "Pr
Dear all,
there is now a Git repository for the Debian Med project on Alioth. While there
is no plan to migrate massively from Subversion to Git in the short or even mid
term, I requested its creation so that we have a place to explore new ways to
package programs, and so that we have an alternati
Hi all,
I can not commit my debian files on debian-med svn.
I've never used ssh, i'm running all on macosX.
Ok so,
ssh ericmaeker-gu...@svn.debian.org
My password is reconized.
groups
Gives me debian-med group
ericmaeker-gu...@alioth:~$ groups
ericmaeker-guest debian-med scm_debian-
Hi!
On Mon, Sep 28, 2009 at 12:31 PM, Eric MAEKER wrote:
> But 'svn checkout svn+ssh://svn.debian.org/svn/debian-med/trunk' ask me to
> type a password and does not reconize it.
It seems that you are missing your username:
svn co svn+ssh://ericmaeker-gu...@svn.debian.org/svn/debian-med/trunk/
On Mon, Sep 28, 2009 at 04:54:05PM +0200, Steffen Moeller wrote:
> > ... and it is probably not worth the effort.
>
> So just submit infernal as it is. Some extra package can be done any time
> later.
I have no problem with this, but I'd prefer if an infernal user would
have a look on my packagi
On Mon, Sep 28, 2009 at 02:28:52PM +0200, Mathieu Malaterre wrote:
> Steve,
>
> Did you try with python-numpy ? If this did not worked did you keep
> the build log ?
I did not try. I assumed the API of python-numarray and python-numpy
is different (did not check this).
-Steve
signature.asc
Le Mon, Sep 28, 2009 at 04:46:39PM -0300, Nelson A. de Oliveira a écrit :
> Hi!
>
> On Mon, Sep 28, 2009 at 12:31 PM, Eric MAEKER wrote:
> > But 'svn checkout svn+ssh://svn.debian.org/svn/debian-med/trunk' ask me to
> > type a password and does not reconize it.
>
> It seems that you are missing
Le Mon, Sep 28, 2009 at 08:26:51AM +0200, Andreas Tille a écrit :
> On Sun, Sep 27, 2009 at 04:18:56PM -0400, Aaron M. Ucko wrote:
> > Thanks for the invitation, which I would gladly accept if not for one
> > major policy disagreement: I find patch systems cumbersome, and
> > greatly prefer to work
Charles Plessy writes:
> the Git repository is ready, and the the ncbi-tools6 is most welcome there. If
> there is interest in keeping the history of the package across stable
> releases,
> or even across all the uploads if somebody kept a copy, this can be done
> easily
> with the git-import-d
Hi!
On Tue, Sep 29, 2009 at 12:08 AM, Aaron M. Ucko wrote:
> Great; thanks! I have been tracking full history in a private svn
> repository, so I'll be wanting to convert that to git; any tips on
> doing so?
See the package git-svn
Best regards,
Nelson
--
To UNSUBSCRIBE, email to debian-med-
On Mon, Sep 28, 2009 at 11:08:48PM -0400, Aaron M. Ucko wrote:
> The other point of divergence from the group policy is that I have
> been using Debhelper 7 whereas it still recommends version 5.
Ups, we should update policy definitely. Recommending debhelper 5 is
oldfashioned. I'm actively push
Ok thanks I will test that this afternoon.
I have question for the svn : my project is already under svn on
google code, can I just add my files to your deposit from my master
svn trunk, so that any changes made on files from /debian/ will be
committed to both deposit (mine and debian-med)
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