Help needed in C++ / seqan issue

2015-04-15 Thread Andreas Tille
Hi, I've got some request to package mugsy which I started in Git[1]. The source contained several code copies. I think I sorted out the code copy of mummer by adding the patches contained in mugsy to the Debian packaged mummer (see my last upload). I also tried to get rid of the outdated seqan

Re: Help needed in C++ / seqan issue

2015-04-15 Thread Gert Wollny
Hello Andreas, I did a debcheckout --user git://git.debian.org/debian-med/mugsy.git \ --git-track '*' and then tried git-buildpackage -uc -us which gives me a gbp:error: upstream/1r2.3+dfsg is not a valid treeish I guess you have to do a "git push --tags". I also have two de

Re: Help needed in C++ / seqan issue

2015-04-15 Thread Andreas Tille
Hi Gert, On Wed, Apr 15, 2015 at 10:53:27AM +0200, Gert Wollny wrote: > > gbp:error: upstream/1r2.3+dfsg is not a valid treeish > > I guess you have to do a "git push --tags". Done. Sorry for the nuisance. > I also have two dead links in the source tree > > mugsyWGA -> mugsy-seqan/pr

Re: Help needed in C++ / seqan issue

2015-04-15 Thread Gert Wollny
Hello Andreas, > I admit I somehow regret that I had the following GSoC idea to late: > > Provide test suites for all Debian Med packages > > I think this makes a great GSoC project - we should remember this for > next year. +1 One option to provide some tests in this case could be based o

Re: Help needed in C++ / seqan issue

2015-04-15 Thread Andreas Tille
Hi Gert, On Wed, Apr 15, 2015 at 12:21:07PM +0200, Gert Wollny wrote: > > I admit I somehow regret that I had the following GSoC idea to late: > > > > Provide test suites for all Debian Med packages > > > > I think this makes a great GSoC project - we should remember this for > > next year. >

Re: Update on Trinityrnaseq packaging

2015-04-15 Thread Andreas Tille
Hi Michael, On Tue, Feb 24, 2015 at 03:03:16PM +, Michael Crusoe wrote: > > > > I admit that I became optimistic after the latest discussion, that we > > have good chances to see libcolt-java in main in a sensible time frame > > (3-6 monthes ??). I'm definitely not sure about libjai-core-java

Access to collab-maint

2015-04-15 Thread Ghislain Vaillant
Dear all, Is there anyone in the team who can grant me access to collab-maint ? I have sent a enquiry email via the Alioth page a while back and never got any reply. I have got some non-science related packages that I'd like to host on collab-maint instead of d-science / d-med. Thank you very muc

Re: Access to collab-maint

2015-04-15 Thread Andreas Tille
Hi Ghislain, On Wed, Apr 15, 2015 at 02:16:07PM +0100, Ghislain Vaillant wrote: > Dear all, > > Is there anyone in the team who can grant me access to collab-maint ? I > have sent a enquiry email via the Alioth page a while back and never got > any reply. I have got some non-science related packa

Re: Access to collab-maint

2015-04-15 Thread Ghislain Vaillant
Hi Andreas, On Wed, 15 Apr, 2015 at 3:14 PM, Andreas Tille wrote: Hi Ghislain, On Wed, Apr 15, 2015 at 02:16:07PM +0100, Ghislain Vaillant wrote: Dear all, Is there anyone in the team who can grant me access to collab-maint ? I have sent a enquiry email via the Alioth page a while back a

Looking for upload sponsor for r-cran-ggplot2

2015-04-15 Thread Benjamin Eikel
Hello Debian Med team, I updated the r-cran-ggplot2 package to a new upstream version. The automatic tests are running successfully and lintian is not reporting any errors. If you do not see anything else to do, I ask for tagging and uploading the package. Thanks and kind regards Benjamin --

Re: Access to collab-maint

2015-04-15 Thread Andreas Tille
Hi Ghislain, On Wed, Apr 15, 2015 at 06:06:49PM +0100, Ghislain Vaillant wrote: > >I vaguely remember that creating a repository on collab-maint need > >to be > >done by a DD and requires manual intervention. > > The description in [1] does not explicitly mentioned this is > restricted to DD usag