Re: Table Information extraction tools in DebianMed?

Hi Nikola, thanks for your interest in Debian Med. On Tue, Jul 19, 2016 at 12:15:34PM +, Nikola Milosevic wrote: > > I am a PhD student at the University of Manchester and during my PhD, I have > developed a set of tools for processing, annotating and information > extraction from tables

Table Information extraction tools in DebianMed?

Hello all, I am a PhD student at the University of Manchester and during my PhD, I have developed a set of tools for processing, annotating and information extraction from tables in biomedical literature (currently supported XML formats of PubMedCentral and DailyMed). The tools can be found on

Re: Please consider a free license for ffp-phylogeny

Hi Gregory, may be you lost this mail somehow. I wonder whether you might reconsider the license for ffp. Kind regards Andreas. On Thu, Nov 26, 2015 at 07:00:31PM +0100, Andreas Tille wrote: > Hi Gregory, > > I'm writing you on behalf of the Debian Med team that has the objective >

Bug#831781: ITP: mash -- fast genome and metagenome distance estimation using MinHash

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss * Package name: mash Version : 1.1 Upstream Author : Brian Ondov, Todd Treangen, Sergey Koren, and Adam Phillippy * URL : https://mash.readthedocs.io * License

Re: MEGAN finally released under the GPL!

Thank you for looking into the repository, Andreas! I can start by contacting Prof. Dr. Daniel Huson[1]. Regards, Jihyeok [1]: https://ab.inf.uni-tuebingen.de/people/huson > On 19 Jul 2016, at 5:35 PM, Andreas Tille wrote: > > Hi Michael, > > On Tue, Jul 19, 2016 at

Re: MEGAN finally released under the GPL!

Hi Michael, On Tue, Jul 19, 2016 at 08:40:19AM +0200, Michael Crusoe wrote: > Any volunteers? > > https://github.com/danielhuson/megan-ce/ I had a *quick* look into the jars inside the Git repository. I hope that we can replace colt.jar by our free-colt. There is also MALT.jar. This is the

Re: Please choose a free license for eigensoft

Hi, On Mon, Jul 18, 2016 at 03:06:56PM -0400, Alkes Price wrote: > Dear Andreas, > > We have now released EIGENSOFT 6.1.2 with a new license, per your request. Thanks a lot for this. While taking care for the packaging I noticed that the ploteig executable which smartpca.pl is refering to is

Re: Please provide source code for Tandem Repeats Finder under a freely redistributable license

Hi again, may be its due to vacations that I have not yet heard from you until now regarding the licensing of TRF. I just want to inspire you by other authors that have considered free licenses for instance MEGAN: https://github.com/danielhuson/megan-ce/ Thanks for considering a free

Re: Please help upgrading eigensoft

Hi Tomasz, On Tue, Jul 19, 2016 at 08:31:24AM +0200, Tomasz Buchert wrote: > > ... > > cc -Wl,-z,relro pca.o eigensrc/eigsubs.o eigx.o nicksrc/libnick.a -lgsl > > -lblas -lgfortran -lrt -lm -o pca > > eigx.o: In function `eigx_': > > /build/eigensoft-6.1.2+dfsg/src/eigx.c:100: undefined

Re: Please help upgrading eigensoft

On Tue, Jul 19, 2016 at 08:47:27AM +0300, merlettaia wrote: > Good morning Andreas, Good morning Tanya, > Check this patch, it should help. > It does the same thing as lapacke.patch (which is commented in > debian/patches/series file) - it adds a -llapack and -llapacke to LDLIBS in Grrr, I

MEGAN finally released under the GPL!

Any volunteers? https://github.com/danielhuson/megan-ce/ (Found via https://twitter.com/koadman/status/755041609683574784 )

[GSoC] dialign uploaded, new todo list

Hi Canberk, seems your hardware problems are solved - at least I noticed the commit for dialign and uploaded after some polishing. Please make sure you are getting debian/changelog properly formated. The easiest way to do so is to use dch. Your date stamp had an invalid format which did not