Re: Status of seqan2

2016-08-06 Thread Andreas Tille
On Sun, Aug 07, 2016 at 02:19:57PM +1000, Kevin Murray wrote: > > It builds for me as well. Lintian claims some JS without source in > >util/py_lib/seqan/dox/tpl/lib/ > > I'll see what I can do about this. > > I raised this with upstream in [1]. They seem to think that it is required for >

Re: Status of seqan2

2016-08-06 Thread Kevin Murray
Hi Andreas, On 16:55 06/08, Andreas Tille wrote: > Hi Kevin, > > On Sat, Aug 06, 2016 at 07:49:27PM +1000, Kevin Murray wrote: > > It appears I have got SeqAn to build. Looks as though they changed the name > > of > > one of their seqan-specific cmake options. I fixed d/rules and the build > >

Re: Status of seqan2

2016-08-06 Thread Andreas Tille
Hi, On Sat, Aug 06, 2016 at 04:55:11PM +0200, Andreas Tille wrote: > On Sat, Aug 06, 2016 at 07:49:27PM +1000, Kevin Murray wrote: > > It appears I have got SeqAn to build. Looks as though they changed the name > > of > > one of their seqan-specific cmake options. I fixed d/rules and the build >

Re: linuxbrew with homebrew/science - works!

2016-08-06 Thread Afif Elghraoui
Hello and apologies for the delay [adding Tim to Cc since he was addressed in Steffen's last message] على الأحد 31 تـمـوز 2016 ‫15:07، كتب Steffen Möller: > > > On 30/07/16 10:15, Afif Elghraoui wrote: >> Hi, all, >> >> على الخميس 28 تـمـوز 2016 ‫03:54، كتب Sascha Steinbiss: I do not know

Tutorial and data for MetaPhLan2 (Re: Description for lefse tools)

2016-08-06 Thread Andreas Tille
Hi Tin, On Sat, Aug 06, 2016 at 01:47:23PM +, Duy Tin Truong wrote: > I meant the latest version of the repository fit with the tutorial on the > repository. If you used the older version (old names), I am afraid users > will have some problems when following the tutorial. To make sure that

Re: Status of seqan2

2016-08-06 Thread Andreas Tille
Hi Kevin, On Sat, Aug 06, 2016 at 07:49:27PM +1000, Kevin Murray wrote: > It appears I have got SeqAn to build. Looks as though they changed the name of > one of their seqan-specific cmake options. I fixed d/rules and the build > appears to succeed. However the only machine I currently have

Re: Description for lefse tools (Was: Origin of data files in MetaPhLan2)

2016-08-06 Thread Duy Tin Truong
Hi Andreas, I meant the latest version of the repository fit with the tutorial on the repository. If you used the older version (old names), I am afraid users will have some problems when following the tutorial. Regarding the separation code and data issue, I will discuss with Nicola next Monday

Re: Status of seqan2

2016-08-06 Thread Kevin Murray
Hi Andreas, It appears I have got SeqAn to build. Looks as though they changed the name of one of their seqan-specific cmake options. I fixed d/rules and the build appears to succeed. However the only machine I currently have access to that has sufficient RAM & disk space is running Ubuntu 14.04,