Re: Auto creation of docker images from Debian (Med) packages?

2017-10-12 Thread Olivier Sallou
On 10/11/2017 05:26 PM, Michael Crusoe wrote: > Hello, > > A quick internet search failed me, so my apologies if the answer to > this is well known. > > Is there a service that automatically builds software containers for > each Debian Med application* package? > > As discussed at this week's bio

Re: Auto creation of docker images from Debian (Med) packages?

2017-10-12 Thread Michael Crusoe
2017-10-12 10:59 GMT+03:00 Olivier Sallou : > > > On 10/11/2017 05:26 PM, Michael Crusoe wrote: > > Hello, > > A quick internet search failed me, so my apologies if the answer to this > is well known. > > Is there a service that automatically builds software containers for each > Debian Med applic

scalatest + graddle

2017-10-12 Thread Olivier Sallou
Hi, one of our packages (htsjdk) introduced scalatest dependency with graddle build file to make their tests. Anyone working on packaging it (did not find it in Debian) ? Or having an easy way to patch the build file to use *regular* graddle testing (I never used graddle) instead of scaltest. up

Re: scalatest + graddle

2017-10-12 Thread Emmanuel Bourg
Hi Olivier, Le 12/10/2017 à 10:05, Olivier Sallou a écrit : > Anyone working on packaging it (did not find it in Debian) ? Or having > an easy way to patch the build file to use *regular* graddle testing (I > never used graddle) instead of scaltest. I'm not aware of anyone working on it. scalate

Re: Proposal for Registry-display on task pages

2017-10-12 Thread Steffen Möller
On 11.10.17 21:29, Andreas Tille wrote: > On Wed, Oct 11, 2017 at 06:20:59PM +0200, Steffen Möller wrote: >>> One question regarding the 'NA' values. I'd consider it more readable >>> if we would just print nothing if there is no entry available. Or am I >>> missing something? >> I put them down

Re: Please provide source code for Tandem Repeats Finder under a freely redistributable license

2017-10-12 Thread Andreas Tille
Hi Yozen, thanks for the helpful and long term promising answer. Kind regards Andreas. On Thu, Oct 12, 2017 at 04:17:59PM -0400, Yozen Hernandez wrote: > Hi Andreas, > > So far, no change from the last time we spoke. > > However I can say that the long term goal is to release TRF under

Re: Please provide source code for Tandem Repeats Finder under a freely redistributable license

2017-10-12 Thread Yozen Hernandez
Hi Andreas, So far, no change from the last time we spoke. However I can say that the long term goal is to release TRF under an open source license, and we have been looking to do this for a while. We have some things we'd like to get done with the code first and then we will pick an open source

Re: Auto creation of docker images from Debian (Med) packages?

2017-10-12 Thread Yaroslav Halchenko
On Thu, 12 Oct 2017, Andreas Tille wrote: > > we auto generate docker images using their stock utility (stockbrew or what > > it became), see https://github.com/neurodebian/dockerfiles > > For singularity, we auto generate just one "ultimate one" - > > https://github.com/neurodebian/neurodebian