My report from Debian Med sprint

2018-03-24 Thread Andreas Tille
Hi, as usual the Debian Med sprint[1] was happening at beginning of the year. This year we met in Barcelona. As usual the sprint was quite productive. The Salsa migration (basically done by Sascha Steinbiss) needed some extra care for some issues which distracted a bit from the actual packaging

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-03-24 Thread Liubov Chuprikova
Dear Andreas, сб, 24 мар. 2018 г. в 17:33, Andreas Tille : On Sat, Mar 24, 2018 at 02:35:41PM +, Liubov Chuprikova wrote: > > Is there a way to test graphical applications in *ncbi-tools-x11? > > I once had the idea in the figtree package to use xvfb-run[1]. It was > not really successful an

ncbi-tools6 does not simply build via gbp due to changed files

2018-03-24 Thread Andreas Tille
Hi Aaron, since Liubov Chuprikova added autopkgtest to ncbi-tools6 I tried to build the package but failed. The repository contains upstream files that are different from the upstream tarball and it is not clear to me how this package should be build at all with this setup. Moreover it seems to

Re: RFS: bioSyntax -- Syntax highlighting for computational biology

2018-03-24 Thread Andreas Tille
Hi Dylan, On Sat, Mar 24, 2018 at 03:31:47PM +0100, Dylan Aïssi wrote: > Could someone review and upload it? Thanks. Uploaded. Could you please make some suggestion in what task (=metapackage) we should put what binary package? I'm undecided between med-bio and med-bio-dev and which binary pack

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-03-24 Thread Andreas Tille
Dear Liubov, On Sat, Mar 24, 2018 at 02:35:41PM +, Liubov Chuprikova wrote: > > I have started to work on writing tests for *ncbi-tools6*, which is the > source for multiple binary packages. Yes. Its tough that you want to tackle this more complex package which is definitely very valuable s

Bug#879619: Autopkgtest for ncbi-tools6

2018-03-24 Thread Liubov Chuprikova
Hello Andreas, I have started to work on writing tests for *ncbi-tools6*, which is the source for multiple binary packages. Some of them contain shared libraries, others are with data files and only two contain executables ( *ncbi-tools-bin* and *ncbi-**tools-x11*). Is there a way to test graphica

RFS: bioSyntax -- Syntax highlighting for computational biology

2018-03-24 Thread Dylan Aïssi
Hi, Could someone review and upload it? Thanks. Best, Dylan Package name: biosyntax URL: https://biosyntax.org/ License: GPL-3 Description: Syntax Highlighting for Computational Biology (gedit) Syntax highlighting for computational biology to bring you intuitively close to your data. BioSynta