Help needed for discosnp

Hi Olivier, I've thought I'm so close to get at least discosnp[1] linked against gatb-core but there is a final thing missing: ... cd /build/discosnp-2.3.0/obj-x86_64-linux-gnu/tools/kissnp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/kissnp2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2

Re: bali-phy: version 3.4.1

Hi Benjamin, uploaded, thanks a lot for your contribution, Andreas. On Tue, Jan 22, 2019 at 02:28:51PM -0500, Benjamin Redelings wrote: > Hi Andreas, > > I pushed bali-phy version 3.4.1 to the salsa repo.  (This version fixes some > bugs in version 3.4.0 that are important for usability, but is

bali-phy: version 3.4.1

Hi Andreas, I pushed bali-phy version 3.4.1 to the salsa repo.  (This version fixes some bugs in version 3.4.0 that are important for usability, but is not a major update.)  In any case, can you please upload it for me? Thank you! -BenRI

Do we need python-seqcluster (Python2) or is python3-seqcluster sufficient

Hi Steffen, I was a bit scared that we have a non-installable package inside Debian and thought it would be a good idea to have python-seqcluster quickly. I realised that some of the (Build-)Depends are only available for Python3. Do we really need python-seqcluster for Python2 or can we just

Re: Do we benefit from a Debian Med machine to run our workflows?

On Tue, Jan 22, 2019 at 10:32:30AM +0100, Steffen Möller wrote: > Hello, > > bcbio just arrived in the New Queue. Somewhat embarrassingly it does not > install, yet, since python3-seqcluster is still missing who have their > Python3 fixes in their devel branch. I am hoping for an upcoming

Re: Where can I find igdiscover (Was: Updated bio for sqt python lib and igdiscover)

On Tue, Jan 22, 2019 at 03:51:17PM +0100, Steffen Möller wrote: > > On 22.01.19 09:11, Andreas Tille wrote: > > > Recommends: idba > > > +Recommends: igdiscover > > > + > > I seeked the package pool and salsa but can not find this package. > > Did you forgot to push some packaging? > Yes. Now I

Re: Where can I find igdiscover (Was: Updated bio for sqt python lib and igdiscover)

On 22.01.19 09:11, Andreas Tille wrote: Hi Steffen, you recently commited an entry to the Debian Med tasks: On Fri, Jan 18, 2019 at 11:57:15PM +, Steffen Möller wrote: Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 2b2fb43c by Steffen Möller at

Do we benefit from a Debian Med machine to run our workflows?

Hello, bcbio just arrived in the New Queue. Somewhat embarrassingly it does not install, yet, since python3-seqcluster is still missing who have their Python3 fixes in their devel branch. I am hoping for an upcoming official release or will package that branch. Either way, we are about to

Where can I find igdiscover (Was: Updated bio for sqt python lib and igdiscover)

Hi Steffen, you recently commited an entry to the Debian Med tasks: On Fri, Jan 18, 2019 at 11:57:15PM +, Steffen Möller wrote: > Steffen Möller pushed to branch master at Debian Blends Team / med > > > Commits: > 2b2fb43c by Steffen Möller at 2019-01-18T23:57:13Z > Updated bio for sqt