Hi Nilesh,
thanks a lot for having a look.
Am Thu, Nov 24, 2022 at 10:01:47AM +0530 schrieb Nilesh Patra:
> On Wed, Nov 23, 2022 at 09:01:40PM +0100, Andreas Tille wrote:
> > python-cobra
>
> It seems like that the interpreter is having trouble referencing the
> name variable. I tried using getN
Hello,
On 2022-11-24 06:31, Nilesh Patra wrote:
python-pyani
This is because python3-biopython does not vendor shared object libs
for python3.11 yet
$ apt-file list python3-biopython | grep '_align'
...
python3-biopython:/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-lin
Am 24.11.2022 um 02:28 schrieb Charles Plessy:
Hello everybody,
I have read the Muscle5 paper and it is a totally different program than
Muscle3.
https://pubmed.ncbi.nlm.nih.gov/36379955/
Reintroducing muscle3 as a separate package might be useful not only to
Biopython, but also to the
Hi Charles,
thank you for the hint.
Am Thu, Nov 24, 2022 at 10:28:43AM +0900 schrieb Charles Plessy:
> I have read the Muscle5 paper and it is a totally different program than
> Muscle3.
>
> https://pubmed.ncbi.nlm.nih.gov/36379955/
>
> Reintroducing muscle3 as a separate package might be u
Hi,
We're getting closer to finishing all the tools that depend on libcifpp.
However, there's one small issue left.
I've split dssp into a library and a wrapper. Currently, I create a
static library and this is used by the tool tortoize. I can make this a
shared library, as it is preferred i
Hi Maarten,
On 2022-11-24 14:01, Maarten L. Hekkelman wrote:
We're getting closer to finishing all the tools that depend on libcifpp.
However, there's one small issue left.
I've split dssp into a library and a wrapper. Currently, I create a
static library and this is used by the tool tortoize
Hi Maarten,
it seems there is a race condition in uploading / pushing to git for
libmcfp (1.2.2-2). I was by chance stumbling upon the short description
that was broken and fixed it besides other routine-update based fixes.
I think I've won with pushing to Salsa but you won on uploading which
is
Hi Andreas,
Op 24-11-2022 om 15:45 schreef Andreas Tille:
it seems there is a race condition in uploading / pushing to git for
libmcfp (1.2.2-2). I was by chance stumbling upon the short description
that was broken and fixed it besides other routine-update based fixes.
I think I've won with pus
Hi Maarten,
Am Thu, Nov 24, 2022 at 03:52:16PM +0100 schrieb Maarten L. Hekkelman:
> I must learn to get my actions in the correct order, that's clear.
Well, this kind of race conditions are *extremely* rare - it was really
by pure chance that I stumbled upon the description and felt a need to
ju
Hi Andreas,
Andreas Tille, on 2022-11-24:
> Am Thu, Nov 24, 2022 at 10:28:43AM +0900 schrieb Charles Plessy:
> > I have read the Muscle5 paper and it is a totally different program than
> > Muscle3.
> >
> > https://pubmed.ncbi.nlm.nih.gov/36379955/
> >
> > Reintroducing muscle3 as a separate
Hi Étienne,
Am Thu, Nov 24, 2022 at 06:58:04PM +0100 schrieb Étienne Mollier:
>
> Thanks for the upload, I further adjusted the muscle wrapper so
> it would catch the muscle3 binary if it finds it in the path, as
> I see your new package provides the executable /usr/bin/muscle3.
> If no such exec
Hi all,
Andreas Tille, on 2022-11-24:
> Am Thu, Nov 24, 2022 at 06:58:04PM +0100 schrieb Étienne Mollier:
> > Thanks for the upload, I further adjusted the muscle wrapper so
> > it would catch the muscle3 binary if it finds it in the path, as
> > I see your new package provides the executable /usr
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