Some answers on BLAST+ and T-Coffee...
> > along with BLAST+
> > enables a key mode of operation in T-Coffee but currently the BLAST+ bit
> > only works with our bio-linux-blast+ package. I'm continuing to work on
> > this.
>
> Did you actually found out what BLAST+ is (I remember you were wonde
Hi Olivier,
On Thu, Feb 03, 2011 at 09:29:19AM +0100, Olivier Sallou wrote:
> Just a hint on Blast+
>
> This is a rewrite of Blast2 with performance improvements and supposed
> eaiser to use.
> But binaries and options were changed. There is a small fdscription we
> made herte: http://drmotif
Regarding biomaj, I have created a get-orig-source to download source
code and rearrange it to create the debian structure, to be used for
packaging.
We have an issue with our forge that is being fixed, so it cannot be
tested for the moment, but it should be ready in the next few days.
On our
Just a hint on Blast+
This is a rewrite of Blast2 with performance improvements and supposed
eaiser to use.
But binaries and options were changed. There is a small fdscription we
made herte: http://drmotifs.genouest.org/2011/02/new-blast-web-form/
Le 2/2/11 10:08 PM, Andreas Tille a écrit :
On Wed, Feb 02, 2011 at 06:19:57PM +, Tim Booth wrote:
> I generally have an aversion to mailing list servers that create a
> public mail archive with e-mail addresses unobfuscated, but as I see the
> damage is now done and my address is on there for all to spam I may as
> well join.
Ahh, hmm,
Hi All,
I'll echo Steffen and Andreas' comments that I really enjoyed the
meeting and the amount of focused work and interaction going on was
fantastic. I'll make sure to finish my "homework" from the meeting but
right now I'm back to trying to sort out all sorts of things at work.
My main point
Meta-remark: I removed those e-mail addresses where I know people are
reading Debian Med list (specifically lea...@debian.org who was
interested in the general resume but not in detailed discussion). I
would be happy if we could move the discussion to
debian-med@lists.debian.org without the long C
On Wed, Feb 02, 2011 at 10:26:27AM +0100, Pjotr Prins wrote:
> I also enjoyed the conf. One result is a further collaboration on
> EMBOSS bindings to Perl, Python, Ruby and the JVM.
Fine.
> > Cool - but what is rq? I can't find it in SVN nor on our tasks page.
>
> Brilliant tool for paralleliz
I also enjoyed the conf. One result is a further collaboration on
EMBOSS bindings to Perl, Python, Ruby and the JVM.
> Cool - but what is rq? I can't find it in SVN nor on our tasks page.
Brilliant tool for parallelized running of programs. Like Gridengine,
or Torque, but *much* simpler to set u
Hi Steffen,
I took the freedom to publish your (actually not that private) mail to
the Debian Med mailing list because on one hand it is interesting in
general for the list on the other hand we are responsible to give a
report to the Debian community which was supporting our sprint.
On Wed, Feb 0
Dear all,
Many of you are aware of the many constructive roles that computers
have in preclinical research. And in the post-genome area, free
access to those data goes closely together with free access to tools
to access those data. Debian, Ubuntu and Open Source technologies at
large are hence ex
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