Re: Aw: Re: ELIXIR tools registry participation - richer metadata for our packages

2016-02-14 Thread jison
, Timothy G." <tbo...@ceh.ac.uk>, "Debian Med Project List" >> <debian-med@lists.debian.org>, "Peter Rice" >> <ricepet...@yahoo.co.uk>, "Hervé Ménager" <herve.mena...@gmail.com> >> Cc: "Jon Ison" <ji...@cbs

Re: ELIXIR tools registry participation - richer metadata for our packages

2016-02-14 Thread Andreas Tille
Hi Steffen, On Sat, Feb 13, 2016 at 06:42:44PM +0100, "Steffen Möller" wrote: > I was thinking about collecting material for an edam-utils package. This > script of Andreas would be part of it, I'm not sure whether my simple script should be part of a tool. Its intention was to provide a simple

Aw: Re: ELIXIR tools registry participation - richer metadata for our packages

2016-02-13 Thread Steffen Möller
...@yahoo.co.uk>, "Hervé > Ménager" <herve.mena...@gmail.com> > Cc: "Jon Ison" <ji...@cbs.dtu.dk> > Betreff: Re: ELIXIR tools registry participation - richer metadata for our > packages > > Hi, > > I'd like to add to this old thread some r

Re: ELIXIR tools registry participation - richer metadata for our packages

2016-02-12 Thread Andreas Tille
Hi, I'd like to add to this old thread some results of a later meeting in Copenhagen - our Debian Med sprint last week kindly sponsored by DTU. I confirm that I took over edam data files in Debian Med packages into UDD. You can easily query all these data by a script I provided on Github:

Re: ELIXIR tools registry participation - richer metadata for our packages

2014-12-07 Thread Charles Plessy
Le Sun, Dec 07, 2014 at 06:49:56AM +0100, Andreas Tille a écrit : On Sat, Dec 06, 2014 at 05:50:07PM +0900, Charles Plessy wrote: Le Sat, Dec 06, 2014 at 07:31:03AM +0100, Andreas Tille a écrit : On Sat, Nov 22, 2014 at 10:55:28AM +0900, Charles Plessy wrote: key| count

Re: ELIXIR tools registry participation - richer metadata for our packages

2014-12-07 Thread Andreas Tille
Hi Charles, On Sun, Dec 07, 2014 at 06:51:04PM +0900, Charles Plessy wrote: the command was select key,count(key) from bibref group by key;. And now I understand why I found nothing in codesearch.debian.net: the package was never finished and uploaded. udd= select * from bibref where key

Re: ELIXIR tools registry participation - richer metadata for our packages

2014-12-06 Thread Charles Plessy
Le Sat, Dec 06, 2014 at 07:31:03AM +0100, Andreas Tille a écrit : On Sat, Nov 22, 2014 at 10:55:28AM +0900, Charles Plessy wrote: key| count ---+--- titile| 1 Any chance to find out the source of this typo? I have not found it. Me neither, using

Re: ELIXIR tools registry participation - richer metadata for our packages

2014-12-06 Thread Andreas Tille
On Sat, Dec 06, 2014 at 05:50:07PM +0900, Charles Plessy wrote: Le Sat, Dec 06, 2014 at 07:31:03AM +0100, Andreas Tille a écrit : On Sat, Nov 22, 2014 at 10:55:28AM +0900, Charles Plessy wrote: key| count ---+--- titile| 1 Any chance to find out

Re: ELIXIR tools registry participation - richer metadata for our packages

2014-11-22 Thread Andreas Tille
Hi, short greetings from Vietnam. :-) On Thu, Nov 20, 2014 at 05:37:10PM +, Booth, Timothy G. wrote: This is Steffen and Tim sharing a desk at the Copenhagen Hackathon of the ELIXIR-DK Catalog of resources in computational biology. There is a general excitement of the collection of tools

Re: ELIXIR tools registry participation - richer metadata for our packages

2014-11-21 Thread Sascha Steinbiss
Dear Steffen and Tim, sounds cool and useful to help people find the right tool for a job in the long run! I for one would prefer the long representation, with one entry per binary. If I can find the time, I would even help updating the metadata files with this kind of information once the format

Re: ELIXIR tools registry participation - richer metadata for our packages

2014-11-21 Thread Charles Plessy
Le Thu, Nov 20, 2014 at 05:37:10PM +, Booth, Timothy G. a écrit : If the list likes this approach, then we can continue annotating a bit more and amend our task pages for it all. Some tools and suites (eg. EMBOSS) have existing annotations from other projects that we can inherit. We are

ELIXIR tools registry participation - richer metadata for our packages

2014-11-20 Thread Booth, Timothy G.
Dear all, This is Steffen and Tim sharing a desk at the Copenhagen Hackathon of the ELIXIR-DK Catalog of resources in computational biology. There is a general excitement of the collection of tools that are associated with Debian Med and its derivatives and we are here to * help the ELIXIR