Re: netcdf uploaded (Re: Package available (was Re: Micro Manager))

2012-04-11 Thread Josh Moore
On Apr 10, 2012, at 12:13 PM, Mathieu Malaterre wrote: On Mon, Jan 16, 2012 at 6:37 PM, Mark Longair mark-debianli...@longair.net wrote: Hi Mathieu, Mathieu Malaterre mathieu.malate...@gmail.com wrote: Hi Mark ! On Sat, Jan 7, 2012 at 1:35 PM, Mark Longair

Re: netcdf uploaded (Re: Package available (was Re: Micro Manager))

2012-04-11 Thread Mathieu Malaterre
Josh, On Wed, Apr 11, 2012 at 10:53 AM, Josh Moore j...@glencoesoftware.com wrote: On Apr 10, 2012, at 12:13 PM, Mathieu Malaterre wrote: On Mon, Jan 16, 2012 at 6:37 PM, Mark Longair mark-debianli...@longair.net wrote: Hi Mathieu, Mathieu Malaterre mathieu.malate...@gmail.com wrote: Hi

Re: netcdf uploaded (Re: Package available (was Re: Micro Manager))

2012-04-11 Thread Mathieu Malaterre
On Wed, Apr 11, 2012 at 10:53 AM, Josh Moore j...@glencoesoftware.com wrote: switch (e.g. ant -Ddebian=true) to allow these commits to live in the mainline? (Would the jars be allowed to remain unused, or must they be deleted to adhere to the Debian guidelines?) Missed that one. Yes we are

Re: netcdf uploaded (Re: Package available (was Re: Micro Manager))

2012-04-11 Thread Josh Moore
Mathieu, On Apr 11, 2012, at 11:10 AM, Mathieu Malaterre wrote: Josh, On Wed, Apr 11, 2012 at 10:53 AM, Josh Moore j...@glencoesoftware.com wrote: On Apr 10, 2012, at 12:13 PM, Mathieu Malaterre wrote: On Mon, Jan 16, 2012 at 6:37 PM, Mark Longair mark-debianli...@longair.net wrote: Hi

netcdf uploaded (Re: Package available (was Re: Micro Manager))

2012-04-10 Thread Mathieu Malaterre
On Mon, Jan 16, 2012 at 6:37 PM, Mark Longair mark-debianli...@longair.net wrote: Hi Mathieu, Mathieu Malaterre mathieu.malate...@gmail.com wrote: Hi Mark ! On Sat, Jan 7, 2012 at 1:35 PM, Mark Longair mark-debianli...@longair.net wrote: [..] NetCDF Java itself also bundles a huge number

Re: netcdf copyright/license question (Re: Package available (was Re: Micro Manager))

2012-01-20 Thread Andreas Tille
On Fri, Jan 20, 2012 at 10:08:41AM +0100, Mathieu Malaterre wrote: On Mon, Jan 16, 2012 at 5:46 PM, Mathieu Malaterre mathieu.malate...@gmail.com wrote: What is left to do, is go over each file, and check all possible license. I found some apache license for examples. Has anyone seen such

Re: Package available (was Re: Micro Manager)

2012-01-09 Thread Steffen Möller
Hi Mark, It is great to see Fiji approaching On 01/07/2012 02:31 PM, Mark Longair wrote: I was very happy about your proposal to start a rearrangement of Fiji that is DFSG compliant. In parallel to that, I would like to discuss the possibility to upload more or less what you have with

Re: Package available (was Re: Micro Manager)

2012-01-07 Thread Mark Longair
Hi Andreas, Andreas Tille andr...@an3as.eu wrote: [..] On Thu, Nov 03, 2011 at 09:06:46PM +0100, Mathieu Malaterre wrote: On Thu, Nov 3, 2011 at 5:14 PM, Mark Longair mark-debianli...@longair.net wrote: [...]  * I've tried as far as possible to replace components from Fiji   with

Re: Package available (was Re: Micro Manager)

2012-01-07 Thread Mark Longair
Hi Steffen, (I should apologise for everyone for my late replies to this thread - I've only recently had time to make substantive progress on this.) Steffen Möller steffen_moel...@gmx.de wrote: Hello, On 11/03/2011 09:06 PM, Mathieu Malaterre wrote: Hi Mark, On Thu, Nov 3, 2011 at 5:14

Re: Package available (was Re: Micro Manager)

2011-11-04 Thread Steffen Möller
Hello, On 11/03/2011 09:06 PM, Mathieu Malaterre wrote: Hi Mark, On Thu, Nov 3, 2011 at 5:14 PM, Mark Longair mark-debianli...@longair.net wrote: [...] Unfortunately, I believe that my current approach to creating the Fiji Debian packages is the wrong one, and it might be worth taking a

Re: Package available (was Re: Micro Manager)

2011-11-03 Thread Andreas Tille
[Maintainer of 3rd party Fiji Debian package in CC Mark, at the Debian Med list we are currently discussing ImageJ / Fiji issues which might be interesting for you. The discussion might be interesting for your from here: http://lists.debian.org/debian-med/2011/11/msg0.html ] On Tue, Nov

Re: Package available (was Re: Micro Manager)

2011-11-03 Thread Mathieu Malaterre
Hi Mark, On Thu, Nov 3, 2011 at 5:14 PM, Mark Longair mark-debianli...@longair.net wrote: [...] It's been a long term aim of mine to get (at least some of) Fiji into Debian, and in fact I've intermittently discussed this with Steffen Möller. Ok that's great news ! Unfortunately, I believe

Re: Package available (was Re: Micro Manager)

2011-11-01 Thread Andreas Tille
On Mon, Oct 31, 2011 at 11:57:35AM +0100, Johan Henriksson wrote: In the future, I hope one of these imagej debian packages will finally disappear, and I would prefer it to be the debian med imagej. It simply cannot compete with FIJI in terms of support. As far as I know there is exactly one

Re: Package available (was Re: Micro Manager)

2011-11-01 Thread Johan Henriksson
fiji is being maintained in a 3rd party repository: http://fiji.sc/wiki/index.php/Downloads There is only one imagej debian package and it is based on the original imagej from http://rsbweb.nih.gov/ij/ and lacks all the extras that fiji includes. in particular, the fiji package is very up to

Re: Package available (was Re: Micro Manager)

2011-10-31 Thread Mathieu Malaterre
with Johan Henriksson who has been generating debian builds in the past. indeed ! What do you mean with main class?  MMCoreJ.jar contains the Micro-Manager Core (written in C++) translated to Java by Swig.  It is not an application in itself, you could think about it as a library.  The Micro

Re: Package available (was Re: Micro Manager)

2011-10-31 Thread Johan Henriksson
What do you mean with main class? MMCoreJ.jar contains the Micro-Manager Core (written in C++) translated to Java by Swig. It is not an application in itself, you could think about it as a library. The Micro-Manager user interface is contained in MMJ_.jar. Here is what get when I try

Re: Package available (was Re: Micro Manager)

2011-10-30 Thread Nico Stuurman
not contains the main class. I am looking for feedback and possibly help to finish this package. I assume that you are in contact with Johan Henriksson who has been generating debian builds in the past. What do you mean with main class? MMCoreJ.jar contains the Micro-Manager Core (written in C

Re: Micro Manager

2009-01-20 Thread Paolo Ariano
Il giorno lun, 19/01/2009 alle 17.34 +0100, Andreas Tille ha scritto: Perhaps somebody from the Debian Med project might be able to increase the preasure from an additional side. yes this was the idea of my post, just to add mass to reach the critical mass but maybe as Johan is writing is

Micro Manager

2009-01-19 Thread Paolo Ariano
Hi * after Imagej, could you fill this software is interesting : http://www.micro-manager.org/ is an Open Source software package for imaging and control of automated microscopes, shutters, cameras and so on. In the case we could start to make a Micro-Manager.deb hth paolo -- NeuroScience

Re: Micro Manager

2009-01-19 Thread Andreas Tille
On Mon, 19 Jan 2009, Paolo Ariano wrote: after Imagej, could you fill this software is interesting : http://www.micro-manager.org/ is an Open Source software package for imaging and control of automated microscopes, shutters, cameras and so on. That's interesting. I just added the

Re: Micro Manager

2009-01-19 Thread Andreas Tille
On Mon, 19 Jan 2009, Johan Henriksson wrote: http://mahogny.areta.org/temp/debs/ and here it is. I'm actually maintaining the linux port. unfortunately there is a pile of dirty licenses involved so I'm not sure this is ready for debian yet. for example, some of the code cannot be given out and

Re: Micro Manager

2009-01-19 Thread Johan Henriksson
Andreas Tille wrote: On Mon, 19 Jan 2009, Johan Henriksson wrote: http://mahogny.areta.org/temp/debs/ and here it is. I'm actually maintaining the linux port. unfortunately there is a pile of dirty licenses involved so I'm not sure this is ready for debian yet. for example, some of the code

Re: Micro Manager

2009-01-19 Thread Andreas Tille
On Mon, 19 Jan 2009, Johan Henriksson wrote: http://debian-med.alioth.debian.org/tasks/imaging.html#micromanager Please verify that the information is correct and reflects the current state of our knowledge. I would like to discuss two questions: this is correct Thanks. 1. Is there a

Re: Micro Manager

2009-01-19 Thread Johan Henriksson
2. Anybody willing to ask upstream to clean up their licenses? you can't imagine how much pressure we are putting on the responsible companies. unfortunately their IP lawyers haven't given up yet. they want to make sure the control codes are not given out. some of the hardware has to be