Re: Problem when trying to upgrade htsjdk

2020-09-15 Thread Andreas Tille
On Tue, Sep 15, 2020 at 04:16:27PM +0200, olivier sallou wrote: > > But the exit code is "fail" anyway. What exactly is your suggestion > > to > > do? > I just made a try to build based on latest code in git, and it worked > for me... So pretty please use your position as "Uploader". ;-) Thanks

Re: Problem when trying to upgrade htsjdk

2020-09-15 Thread olivier sallou
On Tue, 2020-09-15 at 10:44 +0200, Andreas Tille wrote: > On Tue, Sep 15, 2020 at 10:09:10AM +0200, olivier sallou wrote: > > On Sun, 2020-09-13 at 21:37 +0200, Pierre Gruet wrote: > > > - the test > > > htsjdk.samtools.SAMSequenceDictionaryTest.testMergeDictionaries[7 > > > ] > > > outputs an erro

Re: Problem when trying to upgrade htsjdk

2020-09-15 Thread Andreas Tille
On Tue, Sep 15, 2020 at 10:09:10AM +0200, olivier sallou wrote: > On Sun, 2020-09-13 at 21:37 +0200, Pierre Gruet wrote: > > > > - the test > > htsjdk.samtools.SAMSequenceDictionaryTest.testMergeDictionaries[7] > > outputs an error, but it's OK because it is expected to raise an > > Exception; > >

Re: Problem when trying to upgrade htsjdk

2020-09-15 Thread olivier sallou
On Sun, 2020-09-13 at 21:37 +0200, Pierre Gruet wrote: > Hi Andreas, hi everyone, > > Le 11/09/2020 à 09:08, Andreas Tille a écrit : > > Hi, > > > > I tried to upgrade htsjdk[1] but unfortunately I got some build > > time > > test errors. It would be great if somebody could have a look. > > >

Re: Problem when trying to upgrade htsjdk

2020-09-14 Thread olivier sallou
Hi, I got compil and tests issues in the past, but were linked to jdk version available in debian vs their expected version. Those errors looks like context/data issues. I do not know the software itself so will be of little help Olivier Le lun. 14 sept. 2020 à 12:59, Andreas Tille a écrit :

Re: Problem when trying to upgrade htsjdk

2020-09-14 Thread Andreas Tille
Hi Pierre, I've added Olivier and Vincent explicitly to this conversation since they cared in the past for this package. If they can not help here we probably need to consult upstream. Thanks a lot for working on this package Andreas. On Sun, Sep 13, 2020 at 09:37:36PM +0200, Pierre Grue

Re: Problem when trying to upgrade htsjdk

2020-09-13 Thread Pierre Gruet
Hi Andreas, hi everyone, Le 11/09/2020 à 09:08, Andreas Tille a écrit : > Hi, > > I tried to upgrade htsjdk[1] but unfortunately I got some build time > test errors. It would be great if somebody could have a look. > I have looked and tried to build, which succeeded. Then I looked at the log an

Problem when trying to upgrade htsjdk

2020-09-11 Thread Andreas Tille
Hi, I tried to upgrade htsjdk[1] but unfortunately I got some build time test errors. It would be great if somebody could have a look. Kind regards Andreas. [1] https://salsa.debian.org/med-team/htsjdk -- http://fam-tille.de