Hello again,
On 4/13/18 5:51 PM, Steffen Möller wrote:
>
> On 4/13/18 5:24 PM, Andreas Tille wrote:
>> On Fri, Apr 13, 2018 at 03:50:09PM +0200, Steffen Möller wrote:
> Instead of SciCrunch it
> could be RRID:SCR_...
>
may be interesting to set:
RRID:SCR_..
cit
On 4/13/18 5:24 PM, Andreas Tille wrote:
On Fri, Apr 13, 2018 at 03:50:09PM +0200, Steffen Möller wrote:
Instead of SciCrunch it
could be RRID:SCR_...
may be interesting to set:
RRID:SCR_..
cite is a metadata HTML standard that may be supported/analysed by
google and co (https://developer.m
On Fri, Apr 13, 2018 at 03:50:09PM +0200, Steffen Möller wrote:
> > > Instead of SciCrunch it
> > > could be RRID:SCR_...
> > >
> > may be interesting to set:
> >
> > RRID:SCR_..
> >
> > cite is a metadata HTML standard that may be supported/analysed by
> > google and co (https://developer.mozil
On 4/13/18 8:12 AM, Olivier Sallou wrote:
On 04/12/2018 05:10 PM, Steffen Möller wrote:
This was still open on my desk - sorry for the late reply.
On 4/10/18 6:09 PM, Andreas Tille wrote:
On Tue, Apr 10, 2018 at 05:25:52PM +0200, Steffen Möller wrote:
An immediate concern of mine is that we
On 04/12/2018 05:10 PM, Steffen Möller wrote:
> This was still open on my desk - sorry for the late reply.
>
> On 4/10/18 6:09 PM, Andreas Tille wrote:
>> On Tue, Apr 10, 2018 at 05:25:52PM +0200, Steffen Möller wrote:
>>>
>>> An immediate concern of mine is that we have no visibility of our
>>>
This was still open on my desk - sorry for the late reply.
On 4/10/18 6:09 PM, Andreas Tille wrote:
On Tue, Apr 10, 2018 at 05:25:52PM +0200, Steffen Möller wrote:
An immediate concern of mine is that we have no visibility of our
task page with Google. A strategic mistake apparently was
to hav
On Tue, Apr 10, 2018 at 05:25:52PM +0200, Steffen Möller wrote:
>
>
> An immediate concern of mine is that we have no visibility of our
> task page with Google. A strategic mistake apparently was
> to have the actuall RRID hidden in the URL rather than having printed
> it flat out in the task des
On 4/9/18 10:34 PM, Andreas Tille wrote:
On Mon, Apr 09, 2018 at 12:36:32AM +0200, Steffen Möller wrote:
On 4/6/18 2:22 PM, Steffen Möller wrote:
rate4site
sambamba
genometools
maffilter
I've now added an entry severity "error" in the UDD importer log if some
unknown field names might occure
On Mon, Apr 09, 2018 at 12:36:32AM +0200, Steffen Möller wrote:
>
> On 4/6/18 2:22 PM, Steffen Möller wrote:
> > rate4site
> > sambamba
>
> genometools
> maffilter
I've now added an entry severity "error" in the UDD importer log if some
unknown field names might occure. I've fixed *all* errors
On Fri, Apr 06, 2018 at 02:22:40PM +0200, Steffen Möller wrote:
> Whenever you find the moment, please review the presentation of
>
> rate4site
$ yamllint metadata
metadata
1:1 warning missing document start "---" (document-start)
7:8 errortrailing spaces (trailing-spaces)
On 4/6/18 2:22 PM, Steffen Möller wrote:
Hi Andreas,
Whenever you find the moment, please review the presentation of
rate4site
sambamba
genometools
maffilter
on the task page which do not show their references.
Cheers,
Steffen
Hi Andreas,
Whenever you find the moment, please review the presentation of
rate4site
sambamba
on the task page which do not show their references.
Cheers,
Steffen
On Wed, Apr 04, 2018 at 01:56:42PM +0200, Steffen Möller wrote:
>
> > https://blends.debian.org/blends/apa.html#datagathering
> >
> > (A.7.) could be a first shot on this problem.
> One half done. The invitation to contribute to salsa
I have no idea what you might consider *Blend* *specific*
Hi,
On Wed, Apr 04, 2018 at 02:36:57PM +0200, Steffen Möller wrote:
>
> In my PoV there is not too much of a conceptional difference between porting
> to Bio-Linux and having backports within Debian. We need to address both.
> Just who should do all that.
Backporting to Debian stable is a well e
Hi Tony,
On 4/3/18 1:59 PM, Tony Travis wrote:
On 03/04/18 11:27, Steffen Möller wrote:
[...]
This is a bit of a side-track from the core of this thread. Maybe we
would have Tony describing our achievements one they are manifesting in
Bio-Linux. And if we have a look at
https://salsa.debian.org
On 4/3/18 5:09 PM, Andreas Tille wrote:
On Tue, Apr 03, 2018 at 12:27:08PM +0200, Steffen Möller wrote:
There is a daily cron job parsing Salsa directories.
Fine. Somewhere there is (or should be :o) ) a documentation how this page
is crafted. On our Wiki? Let us then have a link to that page.
Hi Tony,
On Tue, Apr 03, 2018 at 12:59:46PM +0100, Tony Travis wrote:
> > [...]
> > This is a bit of a side-track from the core of this thread. Maybe we
> > would have Tony describing our achievements one they are manifesting in
> > Bio-Linux. And if we have a look at
> > https://salsa.debian.org/
On Tue, Apr 03, 2018 at 12:27:08PM +0200, Steffen Möller wrote:
> > There is a daily cron job parsing Salsa directories.
> Fine. Somewhere there is (or should be :o) ) a documentation how this page
> is crafted. On our Wiki? Let us then have a link to that page.
May be this
https://blends.debi
On 03/04/18 11:27, Steffen Möller wrote:
> [...]
> This is a bit of a side-track from the core of this thread. Maybe we
> would have Tony describing our achievements one they are manifesting in
> Bio-Linux. And if we have a look at
> https://salsa.debian.org/dashboard/milestones ? Maybe we can use
On 4/3/18 10:30 AM, Andreas Tille wrote:
On Tue, Apr 03, 2018 at 12:14:57AM +0200, Steffen Möller wrote:
Registry:
- Name: OMICtools
Entry: NA
- Name: RRID
Entry: NA
- Name: bio.tools
Entry: NA
That is an interesting one. Please kindly check
https://salsa.debian.org/me
On Tue, Apr 03, 2018 at 12:14:57AM +0200, Steffen Möller wrote:
>
> > Registry:
> > - Name: OMICtools
> > Entry: NA
> > - Name: RRID
> > Entry: NA
> > - Name: bio.tools
> > Entry: NA
>
> That is an interesting one. Please kindly check
>
> https://salsa.debian.org/med-team/autod
On 4/2/18 11:32 PM, Andreas Tille wrote:
Hi Steffen,
thanks a lot for your continuous work on assembling registry data.
On Sat, Mar 31, 2018 at 02:41:42AM +0200, Steffen Möller wrote:
There are still packages that are not updated. Worthwhile candidates
are
autodock
This has:
Registry:
-
Hi Steffen,
thanks a lot for your continuous work on assembling registry data.
On Sat, Mar 31, 2018 at 02:41:42AM +0200, Steffen Möller wrote:
> There are still packages that are not updated. Worthwhile candidates
> are
>
> autodock
This has:
Registry:
- Name: OMICtools
Entry: NA
- Name:
Hi Andreas,
On 3/30/18 3:14 PM, Andreas Tille wrote:
Hi Steffen,
On Fri, Mar 30, 2018 at 01:11:28AM +0200, Andreas Tille wrote:
Please kindly have a look at clonalframe - it has a ref
for SciCrunch, is yamllint clean but nothing shows up.
H, good catch.
clonalframe | SciCrunch | SCR_
Hi Steffen,
On Fri, Mar 30, 2018 at 01:11:28AM +0200, Andreas Tille wrote:
> > Please kindly have a look at clonalframe - it has a ref
> > for SciCrunch, is yamllint clean but nothing shows up.
>
> H, good catch.
>
> clonalframe | SciCrunch | SCR_016060
>
> is in UDD. I have no idea w
On Thu, Mar 29, 2018 at 08:48:01PM +0200, Steffen Möller wrote:
>
> > > But I found artemis
> > > (https://salsa.debian.org/med-team/artemis/tree/master/debian/upstream)
> > > which was not touched for a while and looks syntactically just fine but
> > > has
> > > its RRIDs not shown.
>
> Please
On 3/29/18 8:48 PM, Steffen Möller wrote:
On 3/28/18 1:14 PM, Andreas Tille wrote:
On Wed, Mar 28, 2018 at 12:03:54PM +0200, Steffen Möller wrote:
But I found artemis
(https://salsa.debian.org/med-team/artemis/tree/master/debian/upstream)
which was not touched for a while and looks syntactica
On 3/28/18 1:14 PM, Andreas Tille wrote:
On Wed, Mar 28, 2018 at 12:03:54PM +0200, Steffen Möller wrote:
But I found artemis
(https://salsa.debian.org/med-team/artemis/tree/master/debian/upstream)
which was not touched for a while and looks syntactically just fine but has
its RRIDs not shown.
Hi Steffen, hi Andreas,
2018-03-28 14:16 GMT+02:00 Andreas Tille :
>
>> Via salsa, though, well, not. Should lintian invoke yamllint, possibly?
>
> As far as I know syntax errors in upstream files are fetched by lintian.
> Its the downside of just using the not yet uploaded commits as data
> input
On Wed, Mar 28, 2018 at 02:10:33PM +0200, Steffen Möller wrote:
>
> > Checking UDD log
> >
> > blends_prospective_gatherer.log:2018-03-27 08:32:05,582 - ERROR - (110):
> > Scanner error in file
> > /srv/udd.debian.org/mirrors/machine-readable/a/artemis.upstream of
> > debian-med: mapping value
On 3/28/18 1:14 PM, Andreas Tille wrote:
On Wed, Mar 28, 2018 at 12:03:54PM +0200, Steffen Möller wrote:
But I found artemis
(https://salsa.debian.org/med-team/artemis/tree/master/debian/upstream)
which was not touched for a while and looks syntactically just fine but has
its RRIDs not shown.
On Wed, Mar 28, 2018 at 12:03:54PM +0200, Steffen Möller wrote:
> But I found artemis
> (https://salsa.debian.org/med-team/artemis/tree/master/debian/upstream)
> which was not touched for a while and looks syntactically just fine but has
> its RRIDs not shown.
Checking UDD log
blends_prospective_
Hi Andreas,
I'll get to the other points of your fine reply a bit later. The easy
ones first
On 3/27/18 9:04 AM, Andreas Tille wrote:
Anyway. I came across
* one or two entries
Which ones?
I had thought this would be dead easy to answer and then I added quite a
few more references sinc
Hi Steffen,
On Mon, Mar 26, 2018 at 07:23:24PM +0200, Steffen Möller wrote:
>
> I just procrastinated a bit into using the comfort of salsa to update
> debian/upstream/metadata and here the references to SciCrunch, OMICtools and
> bio.tools registries. All three registries have improved their cov
Hello,
I just procrastinated a bit into using the comfort of salsa to update
debian/upstream/metadata and here the references to SciCrunch, OMICtools
and bio.tools registries. All three registries have improved their
coverage enormously over the past few months. I am deeply impressed.
Anyway
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