Re: Worth packaging bio_assembly_refinement?

2016-03-10 Thread Afif Elghraoui
Thanks to all for the helpful comments. We'll look into bundling it with the circlator source package until the necessary components officially get merged into circlator. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Re: Worth packaging bio_assembly_refinement?

2016-03-09 Thread Nishadi De Silva
m bio_assembly_refinement. Looking into it, I'm wondering >>>>whether >>>> this is a tool that will just get folded into circlator eventually. Do >>>> you think it's worth packaging it separately? >>> I should add that the alternative would be t

Re: Worth packaging bio_assembly_refinement?

2016-03-08 Thread Martin Hunt
as whether it's worth packaging bio_assembly_refinement /separately/. Yes, I noticed the dependency on bio_assembly_refinement as well and I was’t sure what part of it is really needed, since it’s description sounded a bit similar to Circlator itself. I didn’t have the time yet to look

Re: Worth packaging bio_assembly_refinement?

2016-03-07 Thread Sascha Steinbiss
ded into circlator eventually. Do >> you think it's worth packaging it separately? > > I should add that the alternative would be to bundle it into the > circlator package as a multi-orig tarball. The question is better > rephrased as whether it's worth packaging bio_assembly_refine

Re: Worth packaging bio_assembly_refinement?

2016-03-07 Thread Afif Elghraoui
> you think it's worth packaging it separately? > I should add that the alternative would be to bundle it into the circlator package as a multi-orig tarball. The question is better rephrased as whether it's worth packaging bio_assembly_refinement /separately/. Thanks and regards Afif -- Afi

Worth packaging bio_assembly_refinement?

2016-03-07 Thread Afif Elghraoui
Hi, Sascha, I'm looking into packaging Circlator, which depends on the Sanger program bio_assembly_refinement. Looking into it, I'm wondering whether this is a tool that will just get folded into circlator eventually. Do you think it's worth packaging it separately? Thanks and regards Afif --