Re: igblast accepted - how can it be used to test igdiscover

Andreas Tille writes: > H, very strange. I "simply" pushed and wanted to show you in Salsa-CI > to show you the problem ... but there is no such error as here: OK, thanks. > "no"s by the according Build-Depends if we have the actual library (not > sure yet what is checked by NCBI C

Re: igblast accepted - how can it be used to test igdiscover

Hi Aaron, Am Wed, Aug 03, 2022 at 04:14:53PM -0400 schrieb Aaron M. Ucko: > >> --with-vdb=/usr VDB_INCLUDE=-I/usr/include/ncbi-vdb > > > > Hmmm, this was running into an error which I tried to fix with > > Do you happen to remember what the error was? It worked for me, albeit > in a rather

Re: igblast accepted - how can it be used to test igdiscover

Andreas Tille writes: >> --with-vdb=/usr VDB_INCLUDE=-I/usr/include/ncbi-vdb > > Hmmm, this was running into an error which I tried to fix with Do you happen to remember what the error was? It worked for me, albeit in a rather non-minimal build environment. > I've cleared most of the

Re: igblast accepted - how can it be used to test igdiscover

Hi Aaron, Am Tue, Aug 02, 2022 at 05:44:05PM -0400 schrieb Aaron M. Ucko: > > Am 02.08.2022 um 10:48 schrieb Andreas Tille: > [...] > >> Do you have any other hint how to create the main binaries reliably? > > Ah, sorry, a closer look indicates that the build system needs > additional hints to

Re: igblast accepted - how can it be used to test igdiscover

Steffen Moeller writes: > Thank you both for your help. No problem. > Am 02.08.2022 um 10:48 schrieb Andreas Tille: [...] >> Do you have any other hint how to create the main binaries reliably? Ah, sorry, a closer look indicates that the build system needs additional hints to find system VDB:

Re: igblast accepted - how can it be used to test igdiscover

Hi Andreas, hi Aaron, Thank you both for your help. Am 02.08.2022 um 10:48 schrieb Andreas Tille: Hi Aaron, thanks again for your hints. Am Mon, Aug 01, 2022 at 12:14:32PM -0400 schrieb Aaron M. Ucko: I wonder what needs to be done to create the said binaries. Ah, right, they need VDB;

Re: igblast accepted - how can it be used to test igdiscover

Hi Aaron, thanks again for your hints. Am Mon, Aug 01, 2022 at 12:14:32PM -0400 schrieb Aaron M. Ucko: > > I wonder what needs to be done to create the said binaries. > > Ah, right, they need VDB; please try adding a build dependency on > libncbi-vdb-dev and removing --without-vdb from the

Re: igblast accepted - how can it be used to test igdiscover

Andreas Tille writes: > thanks again a lot for your helpful comments. No problem. > I wonder what needs to be done to create the said binaries. Ah, right, they need VDB; please try adding a build dependency on libncbi-vdb-dev and removing --without-vdb from the configure command line. Also,

Re: igblast accepted - how can it be used to test igdiscover

Hi Aaron, thanks again a lot for your helpful comments. Am Sat, Jul 30, 2022 at 11:41:23PM -0400 schrieb Aaron M. Ucko: > Andreas Tille writes: > > > into igdiscover changelog. Igblast is accepted now. However, despite I did > > the final upload I did not checked for actual binaries which

Re: igblast accepted - how can it be used to test igdiscover

Andreas Tille writes: > into igdiscover changelog. Igblast is accepted now. However, despite I did > the final upload I did not checked for actual binaries which are all "hidden" > in usr/lib/ncbi-igblast/bin. I simply took over your and David's packaging > layout and cared that it builds

igblast accepted - how can it be used to test igdiscover

Hi Steffen, you droped the note BLOCKER: Still needs igblast to test into igdiscover changelog. Igblast is accepted now. However, despite I did the final upload I did not checked for actual binaries which are all "hidden" in usr/lib/ncbi-igblast/bin. I simply took over your and David's