[med-svn] [kmer-tools] 02/02: Initial commit (dh_make initialization)

2015-05-01 Thread Afif Elghraoui
..1106b44 --- /dev/null +++ b/debian/README.Debian @@ -0,0 +1,6 @@ +kmer-tools for Debian +- + + + + -- Afif Elghraoui Fri, 01 May 2015 19:20:00 -0700 diff --git a/debian/README.source b/debian/README.source new file mode 100644 index 000..7b3efd6 --- /dev/null +++ b/debian

[med-svn] [kmer-tools] 01/02: Add basic information in d/control

2015-05-02 Thread Afif Elghraoui
anged, 10 insertions(+), 6 deletions(-) diff --git a/debian/control b/debian/control index aae1bb8..feea947 100644 --- a/debian/control +++ b/debian/control @@ -1,12 +1,16 @@ Source: kmer-tools -Section: unknown +Section: science Priority: optional -Maintainer: Afif Elghraoui -Build-De

[med-svn] [kmer-tools] branch master updated (dd76b9d -> ce5b4c7)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from dd76b9d Initial commit (dh_make initialization) new e778e81 Add basic information in d/control new ce5b4c7 Add skeletal binary

[med-svn] [kmer-tools] 02/02: Add skeletal binary package definitions

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit ce5b4c7207093e22b74454b87e18e8494a7eb417 Author: عفيف الغراوي Date: Sat May 2 00:03:13 2015 -0700 Add skeletal binary package definitions --- de

[med-svn] [wgs-assembler] 01/01: Update Vcs-* fields to point to the git repository

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository wgs-assembler. commit 001d1ddd28419aa7ad37d4fd3b7d89816c82b4c0 Author: عفيف الغراوي Date: Sat May 2 00:23:37 2015 -0700 Update Vcs-* fields to point to the git repo

[med-svn] [wgs-assembler] branch master updated (aacdb7e -> 001d1dd)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository wgs-assembler. from aacdb7e Merge tag 'upstream/8.1+dfsg' new 001d1dd Update Vcs-* fields to point to the git repository The 1 revisions listed above as

[med-svn] [kmer-tools] 03/04: Add override_dh_auto_clean rule

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 95356a5e007d46a94f3e7a289becd1c22bb6b248 Author: عفيف الغراوي Date: Sat May 2 18:05:37 2015 -0700 Add override_dh_auto_clean rule make r

[med-svn] [kmer-tools] branch master updated (ce5b4c7 -> 5b9d7ee)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from ce5b4c7 Add skeletal binary package definitions new 0bd8d3f Add descriptions for some of the binary packages new 4b201a2 Add d

[med-svn] [kmer-tools] 04/04: Remove unnecessary template files

2015-05-02 Thread Afif Elghraoui
: -#<...> -#<...> -### END INIT INFO - -# Author: Afif Elghraoui - -# Do NOT "set -e" - -# PATH should only include /usr/* if it runs after the mountnfs.sh script -PATH=/sbin:/usr/sbin:/bin:/usr/bin -DESC="kmer-tools" -NAME=kmer-to

[med-svn] [kmer-tools] 02/04: Add dh_auto_build rule in the pattern of wgs-assembler

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 4b201a2617692c4e362115d6d39c5b2df04f8939 Author: عفيف الغراوي Date: Sat May 2 17:47:10 2015 -0700 Add dh_auto_build rule in the pattern of wgs-as

[med-svn] [kmer-tools] 01/04: Add descriptions for some of the binary packages

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 0bd8d3fe1e2f000a9dbaa405cbeb345192458c8d Author: عفيف الغراوي Date: Sat May 2 17:43:32 2015 -0700 Add descriptions for some of the binary package

[med-svn] [wgs-assembler] annotated tag upstream/8.1 created (now 23d3f83)

2015-05-02 Thread Afif Elghraoui
Elghraoui on Sat May 2 23:01:45 2015 -0700 - Log - Upstream version 8.1 Afif Elghraoui (1): Imported Upstream version 8.1 --- No new revisions were added

[med-svn] [wgs-assembler] branch upstream updated (6656614 -> 1c238c0)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository wgs-assembler. from 6656614 Imported Upstream version 8.1+dfsg new 1c238c0 Imported Upstream version 8.1 The 1 revisions listed above as "new" are ent

[med-svn] [wgs-assembler] branch master updated (001d1dd -> 4f73c15)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository wgs-assembler. from 001d1dd Update Vcs-* fields to point to the git repository new 1c238c0 Imported Upstream version 8.1 new 4f73c15 Merge tag

[med-svn] [wgs-assembler] annotated tag upstream/8.1+dfsg created (now a2a1b20)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/8.1+dfsg in repository wgs-assembler. at a2a1b20 (tag) tagging 6656614eab8872148a63a261cf0979204654a08b (commit) tagged by عفيف الغراوي on Thu Apr 30 0

[med-svn] [wgs-assembler] 01/01: pristine-tar data for wgs-assembler_8.1.orig.tar.bz2

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository wgs-assembler. commit 347cd549b213754b0d39f539b79bf0950092af7e Author: Afif Elghraoui Date: Sat May 2 23:01:45 2015 -0700 pristine-tar data for wgs

[med-svn] [wgs-assembler] branch pristine-tar created (now 347cd54)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository wgs-assembler. at 347cd54 pristine-tar data for wgs-assembler_8.1.orig.tar.bz2 This branch includes the following new commits: new 347cd54 pris

[med-svn] [wgs-assembler] 02/02: Merge tag 'upstream/8.1'

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository wgs-assembler. commit 4f73c15c1c2ad934b4b8047fb6d4ddae26acf7f2 Merge: 001d1dd 1c238c0 Author: Afif Elghraoui Date: Sat May 2 23:01:46 2015 -0700 Merge tag

[med-svn] [kmer-tools] 03/03: Change target distribution to UNRELEASED

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 08af6cec17ffb777b02ac0a151abae0a766d00ae Author: Afif Elghraoui Date: Sat May 2 23:19:35 2015 -0700 Change target distribution to UNRELEASED

[med-svn] [kmer-tools] 02/03: Add name to uploaders in d/control

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 620645b1f415992d3a403ba6b1f1482be51786d8 Author: Afif Elghraoui Date: Sat May 2 23:16:41 2015 -0700 Add name to uploaders in d/control

[med-svn] [kmer-tools] branch master updated (5b9d7ee -> 08af6ce)

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 5b9d7ee Remove unnecessary template files new 1af265a Remove some more unnecessary template files new 620645b Add name to uplo

[med-svn] [kmer-tools] 01/03: Remove some more unnecessary template files

2015-05-02 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 1af265ab50d8759d85e631612ef6b9bc0fb2c5ae Author: عفيف الغراوي Date: Sat May 2 21:29:45 2015 -0700 Remove some more unnecessary template files ---

[med-svn] [kmer-tools] 02/02: Add script for get-orig-source and the corresponding rule

2015-05-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit d50d042252f980d48565542187947b8075a55d1e Author: Afif Elghraoui Date: Tue May 5 23:02:25 2015 -0700 Add script for get-orig-source and the

[med-svn] [kmer-tools] 01/02: Add upstream/metadata file

2015-05-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit dc50156378f41b8fdbfb8c6d390e1d9eb9268290 Author: Afif Elghraoui Date: Tue May 5 21:42:01 2015 -0700 Add upstream/metadata file Followed

[med-svn] [kmer-tools] branch master updated (08af6ce -> d50d042)

2015-05-05 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 08af6ce Change target distribution to UNRELEASED new dc50156 Add upstream/metadata file new d50d042 Add script for get-orig-so

[med-svn] [kmer-tools] 01/04: Add svn revision number to package version

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit e939f370d30e13c75ec506c019c2034748d4c640 Author: Afif Elghraoui Date: Wed May 6 18:58:22 2015 -0700 Add svn revision number to package version

[med-svn] [kmer-tools] branch master updated (d50d042 -> 90a29bc)

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from d50d042 Add script for get-orig-source and the corresponding rule new e939f37 Add svn revision number to package version new 072

[med-svn] [kmer-tools] 04/04: Don't specify locale in svn command

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 90a29bc2977557135d28318250e34e422ea6a0fc Author: Afif Elghraoui Date: Wed May 6 19:31:17 2015 -0700 Don't specify locale in svn co

[med-svn] [kmer-tools] 03/04: Don't remove anything from the source distribution

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit fba91626b9dcdebf9660e793e77b83c3f1db92e8 Author: Afif Elghraoui Date: Wed May 6 19:09:33 2015 -0700 Don't remove anything from the s

[med-svn] [kmer-tools] 02/04: Change get-orig-source to download the proper svn revision

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 072ff30db3d413c6113f21ee811837aec3e268b1 Author: Afif Elghraoui Date: Wed May 6 19:02:25 2015 -0700 Change get-orig-source to download the

[med-svn] [kmer-tools] branch pristine-tar created (now bb7a5cb)

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository kmer-tools. at bb7a5cb pristine-tar data for kmer-tools_0~20141114+1994.orig.tar.xz This branch includes the following new commits: new bb7a5cb

[med-svn] [kmer-tools] branch master updated (90a29bc -> f2d50ca)

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 90a29bc Don't specify locale in svn command new aa0e4a6 Imported Upstream version 0~20141114+1994 new f2d50ca Merge tag 'upstr

[med-svn] [kmer-tools] 01/02: Imported Upstream version 0~20141114+1994

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit aa0e4a6dabe8f5b2d735fc8ecd5febe57d30229f Author: Afif Elghraoui Date: Wed May 6 19:39:35 2015 -0700 Imported Upstream version 0~20141114+1994

[med-svn] [kmer-tools] 01/01: pristine-tar data for kmer-tools_0~20141114+1994.orig.tar.xz

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository kmer-tools. commit bb7a5cb8fd63552c95f3587f9815fdc731f7926e Author: Afif Elghraoui Date: Wed May 6 19:39:42 2015 -0700 pristine-tar data for kmer-tools_0

[med-svn] [kmer-tools] 02/02: Merge tag 'upstream/0_20141114+1994'

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit f2d50caa22974efacbb3cd4863be78d6783512a5 Merge: 90a29bc aa0e4a6 Author: Afif Elghraoui Date: Wed May 6 19:39:43 2015 -0700 Merge tag 'ups

[med-svn] [kmer-tools] branch upstream updated (b7ab98c -> aa0e4a6)

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository kmer-tools. from b7ab98c Imported Upstream version 0~20141114 new aa0e4a6 Imported Upstream version 0~20141114+1994 The 1 revisions listed above as "n

[med-svn] [kmer-tools] annotated tag upstream/0_20141114+1994 created (now 25397f3)

2015-05-06 Thread Afif Elghraoui
Afif Elghraoui on Wed May 6 19:39:42 2015 -0700 - Log - Upstream version 0~20141114+1994 Afif Elghraoui (1): Imported Upstream version 0~20141114+1994

[med-svn] [kmer-tools] annotated tag upstream/0_20141114 created (now ea4b65c)

2015-05-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/0_20141114 in repository kmer-tools. at ea4b65c (tag) tagging b7ab98c4f059a9199ea14ad0a9198c2c455a34c8 (commit) tagged by عفيف الغراوي on Fri May 1 19:

[med-svn] [kmer-tools] 01/01: Remove obsolete build rules

2015-05-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 7537b5adc97557baa4a1c139e329ba3962706b1a Author: Afif Elghraoui Date: Thu May 7 18:03:09 2015 -0700 Remove obsolete build rules

[med-svn] [kmer-tools] branch master updated (f2d50ca -> 7537b5a)

2015-05-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from f2d50ca Merge tag 'upstream/0_20141114+1994' new 7537b5a Remove obsolete build rules The 1 revisions listed above as "new" are entirely

[med-svn] [kmer-tools] 02/03: Add package definitions

2015-05-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 9ab92e14f03d71cdd283daedfb3085cebea8187d Author: Afif Elghraoui Date: Thu May 7 21:57:19 2015 -0700 Add package definitions This is

[med-svn] [kmer-tools] 03/03: Add copyright file

2015-05-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 41b603ef2f56292385b0010d67f4b6defbbd1ec1 Author: Afif Elghraoui Date: Thu May 7 22:29:07 2015 -0700 Add copyright file Copyrights were

[med-svn] [kmer-tools] branch master updated (7537b5a -> 41b603e)

2015-05-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 7537b5a Remove obsolete build rules new a3c5a35 Remove extra binary package definitions new 9ab92e1 Add package definitions

[med-svn] [kmer-tools] 01/03: Remove extra binary package definitions

2015-05-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit a3c5a3501269ba352dfb2fe272be6a9df7625c66 Author: Afif Elghraoui Date: Thu May 7 21:55:43 2015 -0700 Remove extra binary package definitions

[med-svn] [kmer-tools] 01/02: Add *.install files to appropriately place files

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 495977d8a60397e344743577962cc8f340ae2aa8 Author: Afif Elghraoui Date: Fri May 8 19:18:38 2015 -0700 Add *.install files to appropriately place

[med-svn] [kmer-tools] branch master updated (41b603e -> 1df5554)

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 41b603e Add copyright file new 495977d Add *.install files to appropriately place files new 1df5554 Use existing Debian packag

[med-svn] [kmer-tools] 02/02: Use existing Debian package for kazlib

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 1df5554f4c407e1de8405b0bcdf7abe921c8de2e Author: Afif Elghraoui Date: Sat May 9 02:45:51 2015 -0700 Use existing Debian package for kazlib

[med-svn] [kmer-tools] branch master updated (1df5554 -> 60a84e1)

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 1df5554 Use existing Debian package for kazlib new 1948be1 Make build more portable new 60a84e1 Add ITP bug number The 2 revi

[med-svn] [kmer-tools] 02/02: Add ITP bug number

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 60a84e1f9496bf29cb4936dbe67f17d4b7991355 Author: Afif Elghraoui Date: Sat May 9 12:28:45 2015 -0700 Add ITP bug number --- debian/changelog | 2

[med-svn] [kmer-tools] 01/02: Make build more portable

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 1948be1930034a14f930755914b14726476c3e79 Author: Afif Elghraoui Date: Sat May 9 12:25:20 2015 -0700 Make build more portable Using

[med-svn] [kmer-tools] branch master updated (60a84e1 -> ae76e54)

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 60a84e1 Add ITP bug number new 76aca91 Describe situation with included 3rd-party package in d/README.source new ae76e54 Remo

[med-svn] [kmer-tools] 01/02: Describe situation with included 3rd-party package in d/README.source

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 76aca91b9c9d1518d79f69e3e30e89f22b5747e4 Author: Afif Elghraoui Date: Sat May 9 15:49:22 2015 -0700 Describe situation with included 3rd-party

[med-svn] [kmer-tools] 02/02: Remove unnecessary build-dependency

2015-05-09 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit ae76e54d8c2c02e8dfeef4f13074d16ab797da38 Author: Afif Elghraoui Date: Sat May 9 15:54:16 2015 -0700 Remove unnecessary build-dependency

[med-svn] [smrtanalysis] branch pristine-tar created (now ed2c319)

2015-05-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository smrtanalysis. at ed2c319 pristine-tar data for smrtanalysis_2.3.0.orig.tar.xz This branch includes the following new commits: new ed2c319 prist

[med-svn] [smrtanalysis] branch upstream created (now bb310db)

2015-05-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository smrtanalysis. at bb310db Imported Upstream version 2.3.0 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/g

[med-svn] [smrtanalysis] annotated tag upstream/2.3.0 created (now 6d38898)

2015-05-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/2.3.0 in repository smrtanalysis. at 6d38898 (tag) tagging bb310dba49397e687730c98d654f64f57f6ce1b5 (commit) tagged by Afif Elghraoui on Sat May 16 02

[med-svn] [smrtanalysis] 01/01: pristine-tar data for smrtanalysis_2.3.0.orig.tar.xz

2015-05-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository smrtanalysis. commit ed2c31901c0ca56aea1a6c8fa3bc5df1fee06bc2 Author: Afif Elghraoui Date: Sat May 16 02:15:04 2015 -0700 pristine-tar data for

[med-svn] [smrtanalysis] branch master created (now 2ba5b2f)

2015-05-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository smrtanalysis. at 2ba5b2f Initial commit This branch includes the following new commits: new bb310db Imported Upstream version 2.3.0 new 2ba5b

[med-svn] [smrtanalysis] 02/02: Initial commit

2015-05-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository smrtanalysis. commit 2ba5b2f4df2cf782028d5706e636ae75737ee3fd Author: Afif Elghraoui Date: Sat May 16 15:05:32 2015 -0700 Initial commit --- debian/README.source

[med-svn] [kmer-tools] branch master updated (ae76e54 -> b5faa3e)

2015-05-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from ae76e54 Remove unnecessary build-dependency new cd6e56f Remove some more unnecessary templates new 8cc4424 Make package only b

[med-svn] [kmer-tools] 03/03: Add meryl to debian/control and make some associated changes

2015-05-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit b5faa3e2ff85614a8d0caddc88e2a7223a63dc00 Author: Afif Elghraoui Date: Thu May 21 02:22:09 2015 -0700 Add meryl to debian/control and make some

[med-svn] [kmer-tools] 01/03: Remove some more unnecessary templates

2015-05-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit cd6e56f60e28c1c384bc9349b3daa5d78bf34b79 Author: Afif Elghraoui Date: Sun May 17 13:07:14 2015 -0700 Remove some more unnecessary templates

[med-svn] [kmer-tools] 02/03: Make package only build the meryl subcomponent

2015-05-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 8cc44243177dd177b0bc77de65b78743136a7399 Author: Afif Elghraoui Date: Thu May 21 02:19:16 2015 -0700 Make package only build the meryl

[med-svn] [kmer-tools] branch master updated (b5faa3e -> 74cf124)

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from b5faa3e Add meryl to debian/control and make some associated changes new 8fb2f31 Upgrade svn revision new af8304a Imported Up

[med-svn] [kmer-tools] branch upstream updated (aa0e4a6 -> af8304a)

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository kmer-tools. from aa0e4a6 Imported Upstream version 0~20141114+1994 new af8304a Imported Upstream version 0~20150520+2004 The 1 revisions listed above

[med-svn] [kmer-tools] 05/07: Update standards version (3.9.5->3.9.6)

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 35f4f3928fac9dcc18a1e9f8139adf3f03602a48 Author: Afif Elghraoui Date: Fri May 22 00:17:58 2015 -0700 Update standards version (3.9.5->3.

[med-svn] [kmer-tools] 01/07: Upgrade svn revision

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 8fb2f315054b2468b0783059b478bc3cbbade712 Author: Afif Elghraoui Date: Thu May 21 19:32:34 2015 -0700 Upgrade svn revision This revision

[med-svn] [kmer-tools] 07/07: Remove the last of the template files

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 74cf124abab8de6adf0010c6d3be7c9c1c8e0653 Author: Afif Elghraoui Date: Fri May 22 02:24:50 2015 -0700 Remove the last of the template files

[med-svn] [kmer-tools] 04/07: Update patches to apply cleanly to new upstream SVN "release"

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 536e4522d7fd21eeca1dcb8ba38df76c424758a6 Author: Afif Elghraoui Date: Thu May 21 23:27:30 2015 -0700 Update patches to apply cleanly to new

[med-svn] [kmer-tools] 03/07: Merge tag 'upstream/0_20150520+2004'

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 46147b695b26ae0641687337748b2aee41d02ab6 Merge: 8fb2f31 af8304a Author: Afif Elghraoui Date: Thu May 21 19:40:02 2015 -0700 Merge tag 'ups

[med-svn] [kmer-tools] 01/01: pristine-tar data for kmer-tools_0~20150520+2004.orig.tar.xz

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository kmer-tools. commit 207fe8c4bffd673092369d07db731e1fe400d708 Author: Afif Elghraoui Date: Thu May 21 19:40:02 2015 -0700 pristine-tar data for kmer-tools_0

[med-svn] [kmer-tools] branch pristine-tar updated (bb7a5cb -> 207fe8c)

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository kmer-tools. from bb7a5cb pristine-tar data for kmer-tools_0~20141114+1994.orig.tar.xz new 207fe8c pristine-tar data for kmer-tools_0~20150520+200

[med-svn] [kmer-tools] annotated tag upstream/0_20150520+2004 created (now 34677ed)

2015-05-22 Thread Afif Elghraoui
by Afif Elghraoui on Thu May 21 19:40:02 2015 -0700 - Log - Upstream version 0~20150520+2004 Afif Elghraoui (1): Imported Upstream version 0~20150520+2004

[med-svn] [kmer-tools] 06/07: Add/update *.install files to appropriately place files

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit ba5dfe455209ff126d956ad203b6c956ac2df7e4 Author: Afif Elghraoui Date: Fri May 22 02:16:55 2015 -0700 Add/update *.install files to appropriately

[med-svn] [kmer-tools] branch multibinary created (now 7537b5a)

2015-05-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch multibinary in repository kmer-tools. at 7537b5a Remove obsolete build rules No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.

[med-svn] [kmer-tools] 01/03: Draft manpages generated with help2man

2015-05-23 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 7469d56e41efacb9ce8fc3f8d6523d861a32c204 Author: Afif Elghraoui Date: Sat May 23 01:43:24 2015 -0700 Draft manpages generated with help2man

[med-svn] [kmer-tools] 03/03: Add *.manpages files

2015-05-23 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit f18f6780b80bde08d7ffb0e98216c082e38c707c Author: Afif Elghraoui Date: Sat May 23 03:07:04 2015 -0700 Add *.manpages files --- debian

[med-svn] [kmer-tools] branch master updated (74cf124 -> f18f678)

2015-05-23 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from 74cf124 Remove the last of the template files new 7469d56 Draft manpages generated with help2man new ca62640 Clean up existDB

[med-svn] [kmer-tools] 02/03: Clean up existDB manpage

2015-05-23 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit ca626401a2b084df3c5d3e74bfadfbe00c4f0607 Author: Afif Elghraoui Date: Sat May 23 02:56:06 2015 -0700 Clean up existDB manpage Fix

[med-svn] [kmer-tools] 01/08: Clean up positionDB.1

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 413b59c442af3c3cf016bef4de4f144ced64fdaa Author: Afif Elghraoui Date: Sat May 23 14:50:59 2015 -0700 Clean up positionDB.1 --- debian

[med-svn] [kmer-tools] branch master updated (f18f678 -> b295e1d)

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from f18f678 Add *.manpages files new 413b59c Clean up positionDB.1 new a289a4a Fix synopsis for existDB.1 new 28ed3d1 Fi

[med-svn] [kmer-tools] 03/08: Fix formatting in manpage

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 28ed3d1280d97cd7896cb86d1b96be4e70d23603 Author: Afif Elghraoui Date: Sat May 23 14:53:12 2015 -0700 Fix formatting in manpage Bold

[med-svn] [kmer-tools] 02/08: Fix synopsis for existDB.1

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit a289a4ab4740d42d343511d655d34fd864b44381 Author: Afif Elghraoui Date: Sat May 23 14:51:57 2015 -0700 Fix synopsis for existDB.1 Rather

[med-svn] [kmer-tools] 06/08: Remove comment header from manpages

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 77b2ada4eee6fbcbc114fff9a554f78546c638ff Author: Afif Elghraoui Date: Sun May 24 01:13:15 2015 -0700 Remove comment header from manpages

[med-svn] [kmer-tools] 07/08: Remove brace expansions from meryl package install files

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit dcf2a427b53bb2e8d812e8392e01a9f4789d28c2 Author: Afif Elghraoui Date: Sun May 24 01:34:03 2015 -0700 Remove brace expansions from meryl package

[med-svn] [kmer-tools] 05/08: Polish the remaining man-pages

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit ca2cfe9f3bd7046bb6441e57b26da8a23d5ba4e4 Author: Afif Elghraoui Date: Sun May 24 01:08:01 2015 -0700 Polish the remaining man-pages Fix

[med-svn] [kmer-tools] 08/08: Make kmer and libkmer-dev into metapackages

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit b295e1d20c0759dd82d91876831b207405a8e131 Author: Afif Elghraoui Date: Sun May 24 02:19:18 2015 -0700 Make kmer and libkmer-dev into metapackages

[med-svn] [kmer-tools] 04/08: Remove explanation of three flags in positionDB.1 that don't exist

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 693ddf0b39566fb081630734c9bde6130bd51b75 Author: Afif Elghraoui Date: Sat May 23 14:58:02 2015 -0700 Remove explanation of three flags in

[med-svn] [kmer-tools] 01/04: Update copyright year for Brian Walenz

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 81eb3a1ce47cc388200a54a8be3e36fdb8fd541d Author: Afif Elghraoui Date: Sun May 24 11:57:32 2015 -0700 Update copyright year for Brian Walenz

[med-svn] [kmer-tools] 04/04: Create manpage for last remaining function

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit c9758816c355d353359e3c04131bc573e9962df4 Author: Afif Elghraoui Date: Sun May 24 17:46:36 2015 -0700 Create manpage for last remaining function

[med-svn] [kmer-tools] branch master updated (b295e1d -> c975881)

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from b295e1d Make kmer and libkmer-dev into metapackages new 81eb3a1 Update copyright year for Brian Walenz new 4764f6d Resolve lin

[med-svn] [kmer-tools] 03/04: Don't ship likely unnecessary binaries

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 2db6364b3d3f4bf10ed6b23f900ba7ce169d2924 Author: Afif Elghraoui Date: Sun May 24 17:16:10 2015 -0700 Don't ship likely unnecessary bin

[med-svn] [kmer-tools] 02/04: Resolve lintian norelro error and do final clean-up in d/rules

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 4764f6dc86b1cae2a65fbd287dc0c2b1edcc5471 Author: Afif Elghraoui Date: Sun May 24 16:05:10 2015 -0700 Resolve lintian norelro error and do final

[med-svn] [kmer-tools] 03/04: Make short description unique for libmeryl-dev in d/control

2015-05-26 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit d4125a4ebb4720c19c59bbd4e7bec51d6f2682c8 Author: Afif Elghraoui Date: Mon May 25 23:23:02 2015 -0700 Make short description unique for libmeryl

[med-svn] [kmer-tools] 01/04: Fix build options to fortify source

2015-05-26 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 3f28dda23008e4ebcc342f4d59ed7edd5ef0ebc4 Author: Afif Elghraoui Date: Mon May 25 22:37:26 2015 -0700 Fix build options to fortify source

[med-svn] [kmer-tools] 02/04: Add a dummy watch file explaining the upstream distribution situation

2015-05-26 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 5a92048e501be6dd2c0a1b9771668f4aae22907b Author: Afif Elghraoui Date: Mon May 25 23:21:02 2015 -0700 Add a dummy watch file explaining the

[med-svn] [kmer-tools] branch master updated (a62123d -> a8ee5f7)

2015-05-26 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from a62123d Spacing in long descriptions new 3f28dda Fix build options to fortify source new 5a92048 Add a dummy watch file explai

[med-svn] [kmer-tools] 04/04: Add DEP-3 headers to quilt patches

2015-05-26 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit a8ee5f766a94bfff7c12840e1271603ff1dc7ebb Author: Afif Elghraoui Date: Mon May 25 23:59:37 2015 -0700 Add DEP-3 headers to quilt patches

[med-svn] [kmer-tools] branch multibinary deleted (was 7537b5a)

2015-05-26 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch multibinary in repository kmer-tools. was 7537b5a Remove obsolete build rules The revisions that were on this branch are still contained in other references; therefore, this change d

[med-svn] [kmer-tools] branch sharedlibs created (now 5cb2610)

2015-05-26 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch sharedlibs in repository kmer-tools. at 5cb2610 Make changes to build a shared library for libmeryl This branch includes the following new commits: new 5cb2610 Make chang

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