Re: Is it possible to use ben offline?

2024-05-15 Thread Charles Plessy
> On 5/14/24 2:17 AM, Charles Plessy wrote: > > I see that ben has a --mirror option. But will it work if the "mirror" > > is a local archive containing only Bioconductor packages? Le Tue, May 14, 2024 at 05:24:39AM +0200, Sebastiaan Couwenberg a écrit : > > `b

Is it possible to use ben offline?

2024-05-13 Thread Charles Plessy
s local archive should be seen as an additional layer on top of the official mirror", like a PPA or a backports suite? I would appreciate if you could give me some hints about feasibility and tutorials if there are some. Have a nice day! Charles -- Charles Plessy

Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)

2023-12-08 Thread Charles Plessy
Hi Graham and Andreas, Le Thu, Dec 07, 2023 at 01:37:02PM -0100, Graham Inggs a écrit : > > Also, why do r-bioc-netsam and r-bioc-org.hs.eg.db not even appear on > the tracker? I do not know for r-bioc-netsam, but for r-bioc-org.hs.eg.db and similar packages, it is because it is an "annotation p

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-27 Thread Charles Plessy
place in April or May 2024. As time passes I am starting to wonder if we should just skip the current one... Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
Le Fri, Nov 10, 2023 at 11:30:13PM +0100, Sebastian Ramacher a écrit : > > Can you please clarify whether you are talking about new dependencies or > reverse dependencies above? Thanks. Hi Sebastian, I am talking about the reverse-dependencies of the packages that we need to upload to NEW. Thes

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-10 Thread Charles Plessy
ete the checks and package the new dependencies and submit the to NEW next week. I suppose that we just have to go through he whole process and notify you when it is done? Have a good week-end, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian M

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-09 Thread Charles Plessy
Please trust us this time, and if you think that next time you need to monitor our monitoring, I can for instance toot regularly under a pre-decided hashtag about our preparation and you can review it at the time of the transition, (in about 5 months; the clock is ticking). Have a nice day, Charle

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Charles Plessy
to tell you if and how much the transition will require the processing of packages through the NEW queue. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from wor

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-02 Thread Charles Plessy
declare a reverse-dependency to an existing Bioc package that we ship in Debian. Therefore, I do not expect that this transition will require NEW processing. https://bioconductor.org/news/bioc_3_18_release/ Graham, please let us know when we can start uploading. Have a nice d

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-01 Thread Charles Plessy
of the dependency chain will change again this time. With this in mind, can I ask why is it necessary to upload to experimental first? We never had to do it before, and it is a lot of extra work. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Jap

Re: Proposal: Repository for fast-paced package backports

2019-01-02 Thread Charles Plessy
eds") for solving your own problem :) Have a nice day, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://mastodon.technology/@charles_plessy Tootin

Bug#868558: Would you please not upload new r-* packages until transition is finalised (Re: r-api-3.4)

2017-10-12 Thread Charles Plessy
without uploads is needed if we want to see the r-* packages in Testing. Note that according to the package tracker, r-base will be part of another transition soon. So it may be best to do the 5-day break before it starts. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Bug#859255: binNMU needed for more R packages.

2017-04-30 Thread Charles Plessy
> On Sat, Apr 1, 2017 at 15:24:53 +0900, Charles Plessy wrote: > > > > as a follow-up to #858183, I looked at which other R Bioconductor > > packages were broken by R 3.3.3-1, and it seems that the previous round > > of binNMUs did not repair some of them. > &g

Bug#859255: binNMU needed for more R packages.

2017-04-29 Thread Charles Plessy
Le Sat, Apr 22, 2017 at 11:25:23PM +0900, Charles Plessy a écrit : > > Actually the rebuild was not enough and today I finally understood that > r-bioc-xvector also needs a rebuild (despite its own regression tests > did not fail). Unfortunately R in Sid is now ahead of Testing, and

Bug#859255: binNMU needed for more R packages.

2017-04-22 Thread Charles Plessy
> > Le Sat, Apr 01, 2017 at 03:24:53PM +0900, Charles Plessy a écrit : > >> > >> as a follow-up to #858183, I looked at which other R Bioconductor > >> packages were broken by R 3.3.3-1, and it seems that the previous round > >> of binNMUs did not

Bug#859255: binNMU needed for more R packages.

2017-04-12 Thread Charles Plessy
Le Sat, Apr 01, 2017 at 03:24:53PM +0900, Charles Plessy a écrit : > > as a follow-up to #858183, I looked at which other R Bioconductor > packages were broken by R 3.3.3-1, and it seems that the previous round > of binNMUs did not repair some of them. > nmu r-bioc-rsamtools_1.26

Bug#859255: binNMU needed for more R packages.

2017-03-31 Thread Charles Plessy
nomicalignments_1.10.0-1 . ANY . -m "Rebuild for R 3.3.3." Note to debian-science: there are also R CRAN packages that fail with R 3.3.3, (r-cran-lubridate, r-cran-spam), but I am not yet sure if a binNMU is enough. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Bug#858183: binNMU needed for r-bioc- packages broken by R 3.3.3.

2017-03-19 Thread Charles Plessy
ctors_0.12.1-2 . ANY . -m "Rebuild for R 3.3.3." nmu r-bioc-iranges_2.8.1-1-m . ANY . "Rebuild for R 3.3.3." nmu r-bioc-genomicranges_1.26.2-1 . ANY -m "Rebuild for R 3.3.3." Otherwise I can prepare a more extensive list of packages to rebuild. Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#789214: jessie-pu: package cloud-init/0.7.6~bzr976-2 -> -3

2015-11-12 Thread Charles Plessy
Le Thu, Nov 12, 2015 at 03:19:54PM +0100, Thomas Goirand a écrit : > > Charles, do you have time to do the update of cloud-init in Sid? Not this week, but maybe the next. Cheers, -- Charles

Bug#789214: jessie-pu: package cloud-init/0.7.6~bzr976-2 -> -3

2015-11-11 Thread Charles Plessy
instead, which is now seriously outdated. Regarless of this bug, there will be the demand for a backport of the version in Squeeze, which will satisfy Jessie users almost as well as a stable update. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#789214: Updated package of cloud-init?

2015-09-06 Thread Charles Plessy
Le Thu, Sep 03, 2015 at 12:59:58PM +0900, Charles Plessy a écrit : > Le Wed, Sep 02, 2015 at 11:12:26PM +0200, Julien Cristau a écrit : > > > > > What you do in sid has little to do with the amount of free time I (or > > anyone else, apparently) have to look at an inva

Bug#789214: Updated package of cloud-init?

2015-09-02 Thread Charles Plessy
Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#789214: jessie-pu: package cloud-init/0.7.6~bzr976-2 -> -3

2015-08-18 Thread Charles Plessy
84083: "Note, that I have tested on jessie, the packages that zigo have uploaded in sid (0.7.6~bzr976-4) and it works as expected." Can we go ahead with the proposed stable update ? Have a nice day, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#788283: jessie-pu: package r-cran-rcurl/1.95-4.3-1+deb8u1

2015-06-09 Thread Charles Plessy
20:10:59.0 +0900 +++ r-cran-rcurl-1.95-4.3/debian/changelog 2015-06-09 21:54:48.0 +0900 @@ -1,3 +1,10 @@ +r-cran-rcurl (1.95-4.3-1+deb8u1) jessie; urgency=medium + + * Team upload. + * Build-Depend on libcurl4-openssl-dev only (Closes: #786473). + + -- Charles Plessy Tue, 0

Bug#777090: unblock: bowtie/1.1.1-2

2015-02-04 Thread Charles Plessy
2015-02-03 10:45:22.0 +0900 @@ -1,3 +1,10 @@ +bowtie (1.1.1-2) unstable; urgency=high + + * Team upload. + * Install missing commands. Closes: #776881. + + -- Charles Plessy Tue, 03 Feb 2015 10:44:39 +0900 + bowtie (1.1.1-1) unstable; urgency=medium * New upstream release Let me

Bug#774142: unblock: mime-support/3.58

2014-12-29 Thread Charles Plessy
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package mime-support to fix CVE-2014-0666 in Jessie. unblock mime-support/3.58 Have a nice day, and a BIG THANK YOU for your outstanding work. -- Charles Plessy

Re: First autoremovals happen in about 8 days

2013-10-08 Thread Charles Plessy
removals (and the automated "autopkg" testing) are a big step forward. Let me take this opportunity to thank to the Release team for this ! Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRI

Bug#723064: pu: package emboss-explorer/2.2.0-7+deb7u1

2013-09-16 Thread Charles Plessy
Le Mon, Sep 16, 2013 at 06:00:25PM +0100, Jonathan Wiltshire a écrit : > > On 2013-09-16 13:48, Jonathan Wiltshire wrote: > >Please wait for the > >rejection confirmation mail, and then upload again > > This happened, and I flagged it for acceptance. Thanks a lot ! It was a neat and simple proc

Bug#723064: pu: package emboss-explorer/2.2.0-7+deb7u1

2013-09-15 Thread Charles Plessy
Subject: pu: package emboss-explorer/2.2.0-7+deb7u1 Package: release.debian.org User: release.debian@packages.debian.org Usertags: pu Severity: normal X-Debbugs-CC: debian-med-packag...@lists.alioth.debian.org Le Sun, Sep 15, 2013 at 11:13:05AM +0200, Paul Gevers a écrit : > > > + -

[SRU] emboss-explorer (2.2.0-7deb7u1) stable; urgency=low

2013-09-14 Thread Charles Plessy
Dear Stable release team, the emboss-explorer package in Wheezy is broken, but repaired by the following patch. +--- emboss-explorer/lib/EMBOSS/GUI/XHTML.pm.orig 2012-11-15 09:35:20.390050595 -0700 emboss-explorer/lib/EMBOSS/GUI/XHTML.pm2012-11-15 09:35:58.083051229 -0700 +@@ -31

Bug#700152: unblock: boxshade/3.3.1-7+wheezy1

2013-02-08 Thread Charles Plessy
: #700088. + + -- Charles Plessy Sat, 09 Feb 2013 11:57:21 +0900 + boxshade (3.3.1-7) unstable; urgency=low * debian/install: Make sure boxshade executable will be installed diff -Nru boxshade-3.3.1/debian/patches/remove-newlines.patch boxshade-3.3.1/debian/patches/remove-newlines.patch

Bug#662513: RM: emboss/6.3.1-6

2012-12-11 Thread Charles Plessy
Le Wed, Dec 12, 2012 at 02:17:46AM +0100, intrigeri a écrit : > Hi Charles, > > Charles Plessy wrote (19 Mar 2012 03:36:29 GMT) : > >> On Mon, 2012-03-05 at 14:28 +0900, Charles Plessy wrote: > >> > >> > there is an annoying non-free file in emboss, and

Re: Bug#688630: Bug#688630: t-coffee-doc: empty package

2012-10-21 Thread Charles Plessy
related to the release. I propose to either ignore the emptiness of t-coffee-doc, or to make an upload to testing-proposed-updates, where the t-coffee-doc package would be discarded. Please let us know if you would like this to happen. Have a nice day, -- Charles Plessy Debian Med packaging team

Re: Possible release note for systems running PHP through CGI.

2012-08-20 Thread Charles Plessy
ading towards a solution anyway. What shall I do with #674089 ? I can reassign it to php5-cgi so that your next upload closes it, or do we still need release notes ? Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.de

Possible release note for systems running PHP through CGI.

2012-08-18 Thread Charles Plessy
nless a consensus emerges that this is not the proper solution. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://l

Re: Collaborative maintenance of mime-support (was Re: Using FreeDesktop MIME entries directly in mime-support).

2012-07-25 Thread Charles Plessy
a5f0b0;hb=uploads (And my apologises for messing with the changelog for my first upload of a high-priority package... in contrary of what is written, it was really uploaded ot experimental...) Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-rel

Re: Bug#681687: missing mime entry

2012-07-22 Thread Charles Plessy
gh I would like to keep an option option just in case until we upload, that in case we find a defect in the conversion we might reset it. http://anonscm.debian.org/gitweb/?p=collab-maint/mime-support.git Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to

Collaborative maintenance of mime-support (was Re: Using FreeDesktop MIME entries directly in mime-support).

2012-07-16 Thread Charles Plessy
and Brian, how about the following (inspired by http://dep.debian.net/deps/dep2/) Maintainer: mime-supp...@packages.debian.org Uploaders: Laszlo Boszormenyi (GCS) , Charles Plessy , I propose the following action plan. 0) We subscribe to the PTS (done for me). 1) Upload to experimental an adopted p

Using FreeDesktop MIME entries directly in mime-support (Re: Fixing the mime horror ini Debian).

2012-07-15 Thread Charles Plessy
org/661816), and I wrote much of the MimeTypesSupport page on the Debian wiki (http://wiki.debian.org/MimeTypesSupport). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trou

Seasonal dilemna with EMBOSS.

2012-06-23 Thread Charles Plessy
supported until the end of Wheezy anyway. For the sake of looking fresh at the release, I would have a mild preference for obtaining an exception for 6.5.0. Have a nice Sunday, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To

Bug#675126: RM: ampliconnoise [ia64] -- ROM; Unsatisfied dependance on mafft.

2012-05-29 Thread Charles Plessy
version of mafft currently in Unstable can migrate to Testing. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe"

Bug#662513: RM: emboss/6.3.1-6

2012-03-18 Thread Charles Plessy
> On Mon, 2012-03-05 at 14:28 +0900, Charles Plessy wrote: > > > there is an annoying non-free file in emboss, and resolving that > > problem delays my other works on this package. Le Tue, Mar 13, 2012 at 08:48:46PM +, Adam D. Barratt a écrit : > > Is there a bug repo

Bug#662513: RM: emboss/6.3.1-6

2012-03-05 Thread Charles Plessy
Le Mon, Mar 05, 2012 at 11:51:35AM +, Tim Booth a écrit : > > I'll be up at the EBI in a couple of weeks. Is there anything I can do > to try and persuade them to grant an acceptable license or has this > already been tried? EMBOSS is a software package that I still consider > to be very imp

Bug#662513: RM: emboss/6.3.1-6

2012-03-04 Thread Charles Plessy
be needed for Stable). Cheers, -- Charles Plessy Debian Med packaging team Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.

[Debian-med-packaging] Bug#661426: Bug#661426: FTBFS

2012-02-28 Thread Charles Plessy
ot consume time of people who want to help the release ? I have briefly checked two other embassy-* packages and they built fine in the same chroot where embassy-domalign fails. Have a nice day (and thanks for the QA). -- Charles Plessy Debian Med packaging team Tsurumi,

Re: [Debian-med-packaging] sra-sdk: should it be in Debian?

2012-01-03 Thread Charles Plessy
te is down. Since it is a governmental agency, I suppose it will not last for long… Have a nice day, and a happy new year. -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists

Re: [SRU] non-free/clustalw and non-free/clustalx relicensed to LGPL-3+.

2011-07-17 Thread Charles Plessy
Le Sat, Jul 16, 2011 at 11:06:08PM +0200, Philipp Kern a écrit : > On Thu, Apr 07, 2011 at 10:33:06AM +0900, Charles Plessy wrote: > > I understand your decision for clustalx. I think that there would still be > > a > > benefit to have clustalw in main for Squeeze,

Re: [SRU] perlprimer

2011-06-26 Thread Charles Plessy
Le Sat, Apr 30, 2011 at 01:21:25AM +0900, Charles Plessy a écrit : > Le Fri, Apr 29, 2011 at 04:59:03PM +0100, Adam D. Barratt a écrit : > > On Sun, 2011-03-20 at 18:46 +0900, Charles Plessy wrote: > > > > > > http://git.debian.org/?p=debian-med/perlprimer.git;a=comm

Uploads durign the Perl 5.12 transition ?

2011-05-07 Thread Charles Plessy
Hello everybody, I am working on a package that has recently been binNMUed for the Perl 5.12 transition, libbio-samtools-perl. Do I have to refrain to upload any update until the transition is over ? Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel

Re: [SRU] perlprimer

2011-04-29 Thread Charles Plessy
Le Fri, Apr 29, 2011 at 04:59:03PM +0100, Adam D. Barratt a écrit : > On Sun, 2011-03-20 at 18:46 +0900, Charles Plessy wrote: > > > > http://git.debian.org/?p=debian-med/perlprimer.git;a=commitdiff;h=upstream/1.1.20;hp=upstream/1.1.19 > > Which sections of the diff are

Re: [SRU] non-free/clustalw and non-free/clustalx relicensed to LGPL-3+.

2011-04-06 Thread Charles Plessy
at there would still be a benefit to have clustalw in main for Squeeze, in particular for the generation of entirely Free Squeeze derivatives for science. While we offer a large number of alternatives, Clustal W is the reference in its field. Have a nice day, -- Charles Plessy Debian Med

Re: Bug#619990: developers-reference: Update of merkel.d.o URLs

2011-03-30 Thread Charles Plessy
Le Wed, Mar 30, 2011 at 07:55:39AM +0200, Raphael Hertzog a écrit : > On Wed, 30 Mar 2011, Charles Plessy wrote: > > > If you want to see more details, you can look it up on > > -merkel:/org/&ftp-debian-org;/testing/update_out/ (or > > -in merkel:~aba/testing/up

Re: Bug#619990: developers-reference: Update of merkel.d.o URLs

2011-03-29 Thread Charles Plessy
tag 619990 + patch thanks Le Tue, Mar 29, 2011 at 09:09:55AM +0200, Raphael Hertzog a écrit : > On Tue, 29 Mar 2011, Charles Plessy wrote: > > - For Britney, I do not find the equivalent on ries.d.o for the following: > >merkel:/org/&ftp-debian-org;/testing/update_out/

[SRU] perlprimer

2011-03-20 Thread Charles Plessy
, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.

[SRU] non-free/clustalw and non-free/clustalx relicensed to LGPL-3+.

2011-03-20 Thread Charles Plessy
from 2.0.12-1 to 2.1+lgpl-2. For clustalx, however it would be from 1.83-4 to 2.1+lgpl-1. This corresponds to the replacement of Motif by Qt for the GUI. What is your opinion ? Have a nice Sunday, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi

Re: [Debian-med-packaging] Bug#611008: does not run with current version of R in squeeze

2011-01-25 Thread Charles Plessy
team, are you sure that a rebuild is necessary ? The package seems to work on my system, and has already been rebuilt against R 2.10 as I explained in http://bugs.debian.org/611008#10 Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa,

Bug#592721: unblock: embassy-* and emboss.

2010-12-23 Thread Charles Plessy
Le Thu, Dec 23, 2010 at 05:19:23PM +0100, Mehdi Dogguy a écrit : > > Will you support it during Squeeze's lifetime? Of course. -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Strasbourg, France -- To UNSUBSCRIBE, email to debian-r

Bug#592721: unblock: embassy-* and emboss.

2010-12-23 Thread Charles Plessy
n Squeeze that is old, unsupported, but not RC-buggy, so I would recommend to apply the same rules as for any other package. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Strasbourg, France -- To UNSUBSCRIBE, email to debian-release-requ...@

Bug#592721: unblock: embassy-* and emboss.

2010-12-14 Thread Charles Plessy
-2 Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debi

Bug#603530: RM: bwa/0.5.8a-1

2010-11-14 Thread Charles Plessy
to remove it. In case you wonder why I have not raised it earlier, I indeed added debian-release@lists.debian.org as X-Debbugs-Cc when reporting (through reportbug), but for an unknown reason, the message was never delivered. Have a nice day, -- Charles Plessy, Debian Med team, Tsurumi, Kanagawa

Re: [Debian-med-packaging] Bug#600997: imagej: cannot quit imagej when an image was changed

2010-10-27 Thread Charles Plessy
Le Wed, Oct 27, 2010 at 06:58:05PM +0200, Mehdi Dogguy a écrit : > On 27/10/2010 17:48, Charles Plessy wrote: > > > > I attached the debdiff. Would it be suitable for an upload to > > testing-proposed-updates ? Version 1.44e, still affected, is already in > > Unstable

Bug#592721: unblock: embassy-* and emboss.

2010-10-04 Thread Charles Plessy
t me know what in 6.3.1-6 would cause upgrade difficulties to Lenny users. Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscr

Bug#597989: RM: eucalyptus/1.6.2-2

2010-09-25 Thread Charles Plessy
Le Sat, Sep 25, 2010 at 09:25:06AM +0100, Adam D. Barratt a écrit : > On Sat, 2010-09-25 at 10:24 +0900, Charles Plessy wrote: > > eucalyptus/1.6.2-2 has accumulated a lot of RC bugs, depends on a version > > of a > > java library that is not available anymore in Testin

Bug#597989: RM: eucalyptus/1.6.2-2

2010-09-24 Thread Charles Plessy
the end of Debian's support for Squeeze. Version 2.0.0 has been released a couple of weeks ago and it is on this one that we will concentrate our efforts. Please remove eucalyptus/1.6.2-2 from Testing. Thanks for all your efforts, -- Charles Plessy Debian pkg-eucalyptus team

Re: Bug#595878: wordnet: FTBFS in squeeze: /bin/bash: aclocal-1.10: command not found

2010-09-07 Thread Charles Plessy
and the build was stopped, in a similar way as on the buildds. How about asking the arm and mips porters to autobuild wordnet on antheil or arnold for arm, and mayer for mipsel, where the RAM is 1 Go or more? Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http

Bug#592721: unblock: embassy-* and emboss.

2010-09-05 Thread Charles Plessy
<< 0.1.0++20100721-1~, embassy-phylip << 3.69+20100721-1~, emboss << 6.3.1-5~’ to the libajax6, libnucleus6 and emboss-lib packages, and keep the versions up to date when upstream will release a new version. This will avoid users making mixtures that are not supported. Cheers,

Bug#592721: unblock: embassy-* and emboss.

2010-09-04 Thread Charles Plessy
Le Sat, Sep 04, 2010 at 06:50:03PM +0200, Julien Cristau a écrit : > On Sun, Sep 5, 2010 at 01:12:20 +0900, Charles Plessy wrote: > > > Just remove the embassy packages. This is a perfectly acceptable solution > > that > > I accepted in advance in the first email of th

Bug#592721: unblock: embassy-* and emboss.

2010-09-04 Thread Charles Plessy
Julien, Just remove the embassy packages. This is a perfectly acceptable solution that I accepted in advance in the first email of this thread. -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian

Bug#592721: unblock: embassy-* and emboss.

2010-09-04 Thread Charles Plessy
Le Sat, Sep 04, 2010 at 04:38:07PM +0200, Julien Cristau a écrit : > On Thu, Aug 12, 2010 at 19:40:22 +0900, Charles Plessy wrote: > > > the embassy packages in Squeeze are built against EMBOSS 6.2, which is > > not available anymore except in the Debian snapshots. They will

Bug#592721: unblock: embassy-* and emboss.

2010-08-18 Thread Charles Plessy
e able to migrate if you unblock it. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trou

Bug#592721: unblock: embassy-* and emboss.

2010-08-12 Thread Charles Plessy
, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.

State of the embassy-* packages in Squeeze.

2010-08-10 Thread Charles Plessy
15th, 2011 (or perhaps January 15th, 2011, this is a bit unclear to me). Please let us know your preference, so that I an upload accordingly and send a proper unblock request if needed. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi

Re: libbio-samtools-perl migrated in testing despite build-dependancy libbam-dev is not available there.

2009-11-18 Thread Charles Plessy
severity 544976 important thanks Le Sun, Nov 15, 2009 at 03:27:04PM +0100, Luk Claes a écrit : > Charles Plessy wrote: > > > libbam-dev contains a static library built with -fPIC, and since some people > > raised concerns about security on -devel, that were not contradicted by

libbio-samtools-perl migrated in testing despite build-dependancy libbam-dev is not available there.

2009-11-15 Thread Charles Plessy
close the RC bug on libbam-dev, allowing it to migrate in Testing. This is actually the solution I would favor, because I think I over-reacted when opening this bug, but I would prefer to have your green light before. Have a nice day, -- Charles Plessy Debian Med packaging team, http

Bug#552065: release.debian.org: binNMU for r-cran-* packages for R 2.10.0

2009-10-28 Thread Charles Plessy
Le Fri, Oct 23, 2009 at 09:37:06AM +0200, Philipp Kern a écrit : > On Fri, Oct 23, 2009 at 01:42:02PM +0900, Charles Plessy wrote: > > nmu r-cran-epibasix_1.1-1 . ALL . -m 'Rebuilt against 2.10.0 (new > > documentation format).' > > nmu r-other-mott-happy_2.1-4 . A

Bug#552065: release.debian.org: binNMU for r-cran-* packages for R 2.10.0

2009-10-22 Thread Charles Plessy
mat).' nmu r-cran-spc_0.21-1 . ALL . -m 'Rebuilt against 2.10.0 (new documentation format).' Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: Bits from the release team and request for discussion

2009-07-30 Thread Charles Plessy
hanks for revisiting your decision. It is much appreciated. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: Please allow emboss, embassy-domainatrix, embassy-domalign in Testing.

2009-05-15 Thread Charles Plessy
Le Fri, May 15, 2009 at 09:33:40AM +0200, Adeodato Simó a écrit : > + Charles Plessy (Thu, 14 May 2009 22:53:26 +0900): > > > The emboss package version >6 provides the libajax6 and libnucleus6 > > libraries, > > that are needed by the latest embassy* packages. All o

Please allow emboss, embassy-domainatrix, embassy-domalign in Testing.

2009-05-14 Thread Charles Plessy
Hello, release team. The emboss package version >6 provides the libajax6 and libnucleus6 libraries, that are needed by the latest embassy* packages. All of them are in Unstable. Can you hint them in Testing? Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-28 Thread Charles Plessy
identical packages with cosmetical changes. Anyway, as we say in France, "sans rancune" (no offense). Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-release-requ...@li

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-27 Thread Charles Plessy
Hi Thijs Le Tue, Jan 27, 2009 at 03:11:04PM +0100, Thijs Kinkhorst a écrit : > On Tue, January 27, 2009 14:55, Charles Plessy wrote: > > I was thinking that changes like the one I made would be accepted until > > "Deep freeze", since this is the only planned change of un

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-27 Thread Charles Plessy
Le Tue, Jan 27, 2009 at 11:36:54AM +, Neil McGovern a écrit : > On Tue, Jan 27, 2009 at 07:53:53PM +0900, Charles Plessy wrote: > > The debhelper change, at this very very late stage in the release. Your > previous request was about a month and a half ago. Is there a precise c

Re: Please allow biofox 1.1.5-1 in Lenny.

2009-01-27 Thread Charles Plessy
S/ 529 10-24-05 17:06 locale/en-US/about.dtd 514 10-24-05 17:06 locale/en-US/contents.rdf --- 95973 19 files Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi,

Please allow biofox 1.1.5-1 in Lenny.

2009-01-24 Thread Charles Plessy
> Binary: mozilla-biofox > Architecture: source all > Version: 1.1.5-1 > Distribution: unstable > Urgency: high > Maintainer: Debian-Med Packaging Team > > Changed-By: Charles Plessy > Description: > mozilla-biofox - extension of bioinformatics tools to Iceape an

Re: [Debian-med-packaging] Bug#509863: epigrass: depends on python-matplotlib

2008-12-28 Thread Charles Plessy
ty: optional Maintainer: Debian-Med Packaging Team -Uploaders: Torsten Werner , Varun Hiremath +Uploaders: Torsten Werner , Varun Hiremath , Charles Plessy Build-Depends: debhelper (>= 5.0.38), cdbs (>= 0.4.43), python, python-setuptools, python-central (>= 0.6.0), quilt Standa

Please hint emboss-explorer.

2008-12-14 Thread Charles Plessy
ples dh_link diff -u emboss-explorer-2.2.0/debian/control emboss-explorer-2.2.0/debian/control --- emboss-explorer-2.2.0/debian/control +++ emboss-explorer-2.2.0/debian/control @@ -4,9 +4,9 @@ Maintainer: Debian-Med Packaging Team DM-Upload-Allowed: yes Uploaders: David Paleino , Charles

drgeo not built, blocking fix of Lenny RC bug #505554.

2008-12-09 Thread Charles Plessy
ibglade2-0 seems to be built on Sparc: http://buildd.debian.org/pkg.cgi?pkg=libglade2 Is there anything you can do ? Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Apt built but not installed on alpha, prevents fixing RC bug in Lenny.

2008-12-08 Thread Charles Plessy
Dear Alpha buildd admins, apt is built on alpha but not installed: http://buildd.debian.org/pkg.cgi?pkg=apt It prevents the propagation of version 0.7.19 to Lenny, which fixes the RC bug http://bugs.debian.org/463030 Can you do something? Have a nice day, -- Charles Plessy Tsurumi, Kanagawa

RC#506892 (mpg321): BTS false positive ?

2008-12-08 Thread Charles Plessy
e="filled",shape="ellipse",label="mpg321/0.2.10.5\n(testing)"] "mpg321/0.2.10.6"->"mpg321/0.2.10.5" [dir="back"] } Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Suggested removal: yocto-reader (RC bug, depends on remote scripts).

2008-12-06 Thread Charles Plessy
this email, you can read http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=507579 for more details). Le Thu, Dec 04, 2008 at 10:12:30PM -0800, Walter Landry a écrit : > Charles Plessy <[EMAIL PROTECTED]> wrote: > > Can you have a look to > > http://bugs.debian.org/cgi-bin/bug

Suggestion for removal: acl2.

2008-12-03 Thread Charles Plessy
: 1) acl2 is in Etch, so the removal is a regression. 2) The bug is not unfixable. I would nevertheless argue in favor of the removal, for the sake of concentrating efforts on the packages whithout which Debian can not release. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To

Re: Upload of inkscape_0.46-3 to t-p-u ? (was Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.)

2008-11-12 Thread Charles Plessy
Le Wed, Nov 12, 2008 at 07:24:33AM +0100, Luk Claes a écrit : > > We want a version number greater than 0.46-2.1 and smaller than 0.46-3 > which was not uploaded to the archive yet (otherwise it would be > rejected). An example would be 0.46-2.lenny1. Uploaded. -- Charles Pl

Re: Upload of inkscape_0.46-3 to t-p-u ? (was Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.)

2008-11-11 Thread Charles Plessy
Le Tue, Nov 11, 2008 at 04:47:02PM +0100, Luk Claes a écrit : > Charles Plessy wrote: > > Le Mon, Oct 27, 2008 at 04:47:26PM +0100, Thomas Viehmann a écrit : > >> Charles Plessy wrote: > >>> Many thanks Thomas for the patch. I have forwarded it Upstream for > >

Upload of inkscape_0.46-3 to t-p-u ? (was Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.)

2008-11-08 Thread Charles Plessy
Le Mon, Oct 27, 2008 at 04:47:26PM +0100, Thomas Viehmann a écrit : > Charles Plessy wrote: > > Many thanks Thomas for the patch. I have forwarded it Upstream for review, > > in > > case we can get an official blessing before releasing with the patch. > > > > In

Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.

2008-10-26 Thread Charles Plessy
iting time that leaves next weekend for Wolfram to react. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.

2008-10-25 Thread Charles Plessy
bian/control inkscape-0.46/debian/changelog inkscape-0.46/aclocal.m4 inkscape-0.46/debian/patches/02_uniconvertor_binary_name.dpatch Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan diff -u inkscape-0.46/configure inkscape-0.46/configure --- inkscape-0.46/configure +++ inkscape-0

Re: Package still shipping its menu entry in /usr/lib/menu.

2008-10-24 Thread Charles Plessy
Le Thu, Oct 23, 2008 at 05:08:02PM +0200, Adeodato Simó a écrit : > * Charles Plessy [Wed, 15 Oct 2008 12:42:25 +0900]: > > > I just realised that one of our pakcages, `med-doc', still ships its > > menu files in /usr/lib/menu. This could be solved by binNMU, but I can >

Re: [inkscape] Impossible to change font if ttf-bitstream-vera is not installed.

2008-10-22 Thread Charles Plessy
Le Wed, Oct 22, 2008 at 07:21:44PM +0200, Thomas Viehmann a écrit : > Adeodato Simó wrote: > > Charles, if the fix for this bug is simply adding a depends on > > ttf-bitstream-vera, then the fix is suitable for lenny, and we'll > > happily unblock it. > > > Can we have a proper fix, though, please

[inkscape] Impossible to change font if ttf-bitstream-vera is not installed.

2008-10-20 Thread Charles Plessy
). If you do not like the idea, I propose to submit a patch to the release notes instead. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Rkward fit for the release but unmaintained

2008-10-18 Thread Charles Plessy
d version of rkward in case of problems, the release team could nevertheless consider removing rkward from Lenny. Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". T

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