Bug#1012267: ITP: python-mongomock -- Fake pymongo stub for testing simple MongoDB-dependent code

2022-06-02 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-mongomock Version : 4.0.0 Upstream Author : Rotem Yaari * URL : https://github.com/mongomock/mongomock * License : BSD-3-Clause Programming Lang: Python Description : Fake

Bug#995289: foolscap: ready for upload

2022-05-30 Thread Andrius Merkys
Hi Vasudev, On 2022-05-25 07:00, Vasudev Kamath wrote: > Sorry this message some how missed my inbox and did not notice till > today. I'm new to python team and I will let you do the upload. > > I will wait for couple of days for your response else I will prepare and > upload the same. Thanks

Bug#1011671: ITP: python-prodigy -- Protein Binding Affinity Prediction

2022-05-26 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 1011507 * Package name: prodigy Version : 2.0.0 Upstream Author : Computational Structural Biology Group at Utrecht University * URL : https://github.com/haddocking/prodigy

Bug#1011507: ITP: python-freesasa -- Python bindings for FreeSASA

2022-05-24 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-freesasa Version : 2.1.0 Upstream Author : Simon Mitternacht * URL : https://freesasa.github.io/python/ * License : Expat Programming Lang: Python Description : Python

Bug#1011264: ITP: freesasa -- Solvent Accessible Surface Area of biomolecules

2022-05-19 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: freesasa Version : 2.1.0 Upstream Author : Simon Mitternacht * URL : https://github.com/mittinatten/freesasa * License : Expat Programming Lang: C Description : Solvent Accessible

Bug#1010661: ITP: r-cran-lintr -- Linter for R Code

2022-05-06 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: r-cran-lintr Version : 2.0.1 Upstream Author : Jim Hester * URL : https://cran.r-project.org/package=lintr * License : Expat Programming Lang: GNU R Description : Linter for R Code

Bug#1010341: ITP: provean -- Protein Variation Effect Analyzer

2022-04-29 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: provean Version : 1.1.5 Upstream Author : J. Craig Venter Institute * URL : http://provean.jcvi.org * License : GPL-3 Programming Lang: C Description : Protein Variation Effect

Bug#1010169: ITP: tiny-dnn -- header only deep learning framework in C++

2022-04-25 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist X-Debbugs-CC: debian...@lists.debian.org * Package name: tiny-dnn Version : 1.0.0a3+ds Upstream Author : Taiga Nomi * URL : https://github.com/tiny-dnn/tiny-dnn * License : BSD-3-Clause Programming Lang

Bug#944785: ITP: pufferfish -- An efficient index for the colored, compacted, de Bruijn graph

2022-04-25 Thread Andrius Merkys
Control: block -1 by 1006920 Hello, Build dependencies for pufferfish 1.8.0+dfsg-1 [1] cannot be satisfied due to #1006920: twopaco needs older libtbb, while pufferfish needs newer, and both are not co-installable. I can confirm that applying patch from #1006920 solves the issue. However, once

Bug#1009673: RFA: swagger-core -- Java implementation of the OpenAPI Specification

2022-04-14 Thread Andrius Merkys
Package: wnpp Hello, I would like to pass the maintenance of swagger-core to someone more motivated. The package is in relatively good shape, albeit in need to be updated to new upstream release. In addition, some modules are ignored. I initially packaged swagger-core as a dependency of

Bug#1009360: ITP: r-cran-xmlparsedata -- Parse Data of R Code as an XML Tree

2022-04-12 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: r-cran-xmlparsedata Version : 1.0.5 Upstream Author : Gábor Csárdi * URL : https://cran.r-project.org/package=xmlparsedata * License : Expat Programming Lang: GNU R Description

Bug#1006600: additional info

2022-04-07 Thread Andrius Merkys
Hi Dmitry! On 2022-04-07 13:21, Dmitry Shachnev wrote: > Please see the discussion in #975505 for the latest status of MathJax 3 > packaging. > > TL;DR: It will be a separate package, Yadd started working on it but there > are some blocker. Thanks for the information! Best wishes, Andrius

Bug#1008742: ITP: python-pydna -- Data structures to work with double stranded DNA

2022-03-31 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 1008586 * Package name: python-pydna Version : 4.0.7 Upstream Author : Björn Johansson * URL : https://github.com/BjornFJohansson/pydna * License : BSD-3-Clause Programming Lang

Bug#1008622: ITP: python-pdbfixer -- Fix problems in Protein Data Bank files

2022-03-29 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-pdbfixer Version : 1.8.1 Upstream Author : Stanford University and Peter Eastman * URL : https://github.com/openmm/pdbfixer * License : Expat Programming Lang: Python Description

Bug#1008586: ITP: python-cai -- Python Codon Adaptation Index

2022-03-29 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-cai Version : 1.0.2 Upstream Author : Benjamin Lee * URL : https://github.com/Benjamin-Lee/CodonAdaptationIndex * License : Expat Programming Lang: Python Description

Bug#1008248: ITP: setcover -- Time/Memory Linear greedy set cover

2022-03-25 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 944785 by -1 * Package name: setcover Version : 0.0~git20161128.b1de791 Upstream Author : Martin Steinegger * URL : https://github.com/martin-steinegger/setcover * License : Expat

Bug#944785: pufferfish now builds

2022-03-24 Thread Andrius Merkys
Hello, I have stumbled upon pufferfish in Salsa which used to FTBFS. I patched its build system a bit and now it builds successfully. If it is OK with you, I can continue finalizing the package. Best, Andrius

Bug#1006621: ITP: boofcv -- Real-time computer vision library

2022-03-24 Thread Andrius Merkys
Hi Peter, Thanks for prompt reply. On 2022-03-24 17:16, Peter A wrote: > Instead of updating the "gradle" command could we just install a new > "gradle7" command that points to Gradle 7 instead? I don't think Gradle > is very backwards compatible so that might be the easiest solution. This

Bug#1006621: ITP: boofcv -- Real-time computer vision library

2022-03-24 Thread Andrius Merkys
Dear Peter and Dima, Sorry for the delay. Somehow I did not receive any mails sent to 1006...@bugs.debian.org (will subscribe), thus I only now noticed your conversation after accidentally revisiting the bug page. Good to meet you too, Peter! First of all, regarding Cephis, my original reason

Bug#1008173: ITP: r-cran-cyclocomp -- Cyclomatic Complexity of R Code

2022-03-23 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: r-cran-cyclocomp Version : 1.1.0 Upstream Author : Gabor Csardi * URL : https://cran.r-project.org/package=cyclocomp * License : Expat Programming Lang: GNU R Description

Bug#1007266: ITP: node-sockjs -- WebSocket-like API

2022-03-15 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 960906 by -1 * Package name: node-sockjs Version : 0.3.24 Upstream Author : VMware, Inc. * URL : https://github.com/sockjs/sockjs-node * License : Expat Programming Lang: JavaScript

Bug#1006621: ITP: boofcv -- Real-time computer vision library

2022-03-01 Thread Andrius Merkys
Hello, On 2022-03-01 09:12, Andrius Merkys wrote: > I have my packaging at hand and I will push it once Salsa becomes online > again. I will use my personal namespace. I will let you know when this > is done. I have pushed my packaging to Salsa: https://salsa.debian.org/merkys/

Bug#1006621: ITP: boofcv -- Real-time computer vision library

2022-02-28 Thread Andrius Merkys
Hi Dima, On 2022-02-28 22:04, Dima Kogan wrote: > Andrius: you packaged some of the dependencies of BoofCV, and you > mentioned that you were interested in getting BoofCV itself into Debian. > Are you still interested in doing that? If you already looked into it, > can you share any specific

Bug#1005990: ITP: python-mmcif-pdbx -- utilities for PDBx/mmCIF storage model

2022-02-18 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 1005971 by -1 * Package name: python-mmcif-pdbx Version : 2.0.1 Upstream Author : John Westbrook * URL : https://github.com/Electrostatics/mmcif_pdbx * License : CC0-1.0 Programming Lang

Bug#1005969: ITP: propka -- heuristic pKa calculations with ligands

2022-02-18 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: propka Version : 3.4.0 Upstream Author : Jan H. Jensen * URL : http://propka.org * License : LGPL-2.1 Programming Lang: Python Description : heuristic pKa calculations with ligands

Bug#1005320: ITP: feff85exafs -- Open Source theoretical EXAFS calculations

2022-02-11 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 949126 by -1 * Package name: feff85exafs Version : 0.2 Upstream Author : University of Washington * URL : https://github.com/xraypy/feff85exafs * License : BSD-2-Clause Programming Lang

Bug#995289: foolscap: ready for upload

2022-01-27 Thread Andrius Merkys
Hello, I have removed unneeded files from python3-foolscap binary package. Furthermore, there was an issue with building package with git-buildpackage, which I solved by updating the certificates used for tests. The package is ready for the upload now. If it is OK, I can upload it myself.

Bug#995289: foolscap: status

2022-01-25 Thread Andrius Merkys
Control: block 995352 by -1 Hello, I have fixed the autopkgtest for foolscap. Now the package builds and passes its autopkgtest on sbuild successfully. There seem to be stochastic build failures, however. Out of ~8 builds I performed one failed with non-apparent reason. One remaining blocker

Bug#1003950: ITP: pyobjcryst -- Object-Oriented Crystallographic Library Python3 bindings

2022-01-18 Thread Andrius Merkys
Hi Neil, On 2022-01-18 16:03, Neil Williams wrote: > The package build-depends in libobjcryst (ITP #1001380) which in turn > build-depends on cctbx (ITP: 679905), so packaging work will continue > for a while until cctbx is accepted from NEW and libobjcryst can go > through NEW. I have many

Bug#991315: ITP: python-immutabledict

2022-01-12 Thread Andrius Merkys
Hi Steffen, I took the liberty to solve the build problems with python-immutabledict and pushed my commits to salsa. The package builds on sbuild and passes its tests now. Best, Andrius

Bug#1003512: RFA: cherrytree -- hierarchical note taking application

2022-01-11 Thread Andrius Merkys
Package: wnpp Hello, I would like to pass the maintenance of cherrytree to someone else, preferably to be maintained in an appropriate team. The package is in a good shape, the upstream is highly responsible, but I personally do not use it, and I believe someone who does could improve several

Bug#1003508: ITP: node-wikidata-lang -- Wikidata language database

2022-01-10 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 1003202 by -1 * Package name: node-wikidata-lang Version : 2.0.11 Upstream Author : Maxime Lathuilière * URL : https://github.com/inventaire/wikidata-lang * License : Expat Programming

Bug#1003262: ITP: python-docx-template -- Python DOCX template engine

2022-01-06 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 999508 by -1 * Package name: python-docx-template Version : 0.15.1 Upstream Author : Eric Lapouyade * URL : https://github.com/elapouya/python-docx-template * License : LGPL-2.1

Bug#1003202: ITP: node-wikibase-cli -- command-line interface to Wikibase

2022-01-06 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 1003172 * Package name: node-wikibase-cli Version : 15.15.4 Upstream Author : Maxime Lathuilière * URL : https://github.com/maxlath/wikibase-cli * License : Expat Programming Lang

Bug#1003172: ITP: node-copy-paste -- access to the system clipboard

2022-01-05 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: node-copy-paste Version : 1.3.0 Upstream Author : Xavi Ramirez * URL : https://github.com/xavi-/node-copy-paste * License : Expat Programming Lang: Javascript Description : access

Bug#679905: 2021.8+ds2-1 - Pending

2022-01-05 Thread Andrius Merkys
On 2022-01-05 13:37, Neil Williams wrote: > On Fri, 17 Dec 2021 12:57:48 +0200 Andrius Merkys > wrote: >> I see you have switched from having all libraries in cctbx/ >> subdirectory [1] to public libs and libdevel locations. Personally I >> do think Debian as a down

Bug#959412: Puppeteer status?

2022-01-04 Thread Andrius Merkys
On 2022-01-04 19:11, Martina Ferrari wrote: > One more thing: I see the salsa repos do not have the upstream sources.. > Is there a reason for that? What commands/tools do you use to get the > source and build the pacakge? For Javascript packages I usually keep only debian/ directory in the VCS.

Bug#959412: Puppeteer status?

2022-01-04 Thread Andrius Merkys
Hi, On 2022-01-04 19:10, Martina Ferrari wrote: > On 03/01/2022 08:13, Andrius Merkys wrote: > >> I have revisited puppeteer packaging. I have collected missing >> dependencies, packaged a missing one, node-devtools-protocol, and >> attempted to update to the newest u

Bug#959412: Puppeteer status?

2022-01-03 Thread Andrius Merkys
Hi again, On 2021-12-31 02:47, Martina Ferrari wrote: > I was wondering what is the status of this ITP? I need puppeteer for > $DAYJOB, and I would prefer to use a proper Debian package. > > It seems not much has happened in the last year in the salsa repo, is > there much left to be done? I

Bug#1002899: ITP: node-devtools-protocol -- Chrome DevTools Protocol JSON

2021-12-31 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 959412 by -1 * Package name: node-devtools-protocol Version : 0.0.801017 Upstream Author : The Chromium Authors * URL : https://github.com/ChromeDevTools/devtools-protocol * License : BSD-3

Bug#1002567: ITP: libjson-schema-modern-perl -- Validate JSON data against a schema

2021-12-31 Thread Andrius Merkys
Hi Damyan, On 2021-12-24 12:15, Damyan Ivanov wrote: > JSON::Schema::Modern aims to be a fully-compliant JSON Schema evaluator and > validator, targeting the currently-latest Draft 2020-12 > (https://json-schema.org/specification-links.html#2020-12). Thanks for an interesting ITP. I find it

Bug#959412: Puppeteer status?

2021-12-31 Thread Andrius Merkys
Hi Martina, On 2021-12-31 02:47, Martina Ferrari wrote: > I was wondering what is the status of this ITP? I need puppeteer for > $DAYJOB, and I would prefer to use a proper Debian package. > > It seems not much has happened in the last year in the salsa repo, is > there much left to be done? I

Bug#1002470: RFP: opensearch -- search engine, fork of Elasticsearch

2021-12-22 Thread Andrius Merkys
Package: wnpp Severity: wishlist X-Debbugs-Cc: debian-de...@lists.debian.org Control: block -1 by 926714 * Package name: opensearch Version : 1.1.0 Upstream Author : Amazon Web Services * URL : https://www.opensearch.org * License : Apache-2.0 Programming

Bug#679905: 2021.8+ds2-1 - Pending

2021-12-17 Thread Andrius Merkys
Hi Neil, On 2021-12-16 11:19, Neil Williams wrote: > README.source: > > cctbx for Debian > > > CCTBX upstream does not manage SONAME versions, so a version is added > in the Debian patches. This means that new upstream releases of cctbx > should update the patch to cause a

Bug#679905: Working build being tested

2021-12-09 Thread Andrius Merkys
Hi Neil, On 2021-12-09 12:06, Neil Williams wrote: > On Thu, 9 Dec 2021 11:22:28 +0200 > Andrius Merkys wrote: >> On 2021-12-09 11:05, Neil Williams wrote: >>> Only the cctbx cbflib scitbx crys3d libtbx iotbx wxtbx smtbx modules >>> are enabled. Some modu

Bug#679905: Working build being tested

2021-12-09 Thread Andrius Merkys
Hi Neil, On 2021-12-09 11:05, Neil Williams wrote: > New upstream version is now building in Salsa CI. > > https://salsa.debian.org/science-team/cctbx Awesome news! Are you getting binary packages that could be used by reverse-dependencies of cctbx? > This build is targeted at supported

Bug#1000997: ITP: libmath-matrix-maybegsl-perl -- Uniform use of Math::MatrixReal and Math::GSL::Matrix

2021-12-02 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libmath-matrix-maybegsl-perl Version : 0.007 Upstream Author : Alberto Simões * URL : https://metacpan.org/release/Math-Matrix-MaybeGSL * License : Artistic Programming Lang: Perl

Bug#1000630: ITP: libbibtex-parser-perl -- pure Perl BibTeX parser

2021-11-25 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 999599 * Package name: libbibtex-parser-perl Version : 1.03 Upstream Author : Gerhard Gossen and Boris Veytsman * URL : https://metacpan.org/release/BibTeX-Parser * License : Artistic

Bug#1000141: ITP: node-config -- configuration control for production Node deployments

2021-11-18 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 998392 by -1 * Package name: node-config Version : 3.3.6.9.g98f2fc9 Upstream Author : Loren West * URL : https://github.com/lorenwest/node-config * License : Expat Programming Lang

Bug#999599: ITP: liblatex-tounicode-perl -- Convert LaTeX commands to Unicode

2021-11-12 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: liblatex-tounicode-perl Version : 0.11 Upstream Author : Gerhard Gossen and Boris Veytsman * URL : https://metacpan.org/release/LaTeX-ToUnicode * License : Artistic Programming Lang: Perl

Bug#999508: ITP: finalcif -- editor for Crystallographic Information Format

2021-11-11 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 999468 996095 * Package name: finalcif Version : 91 Upstream Author : Daniel Kratzert * URL : https://dkratzert.de/finalcif.html * License : Beerware Programming Lang: Python

Bug#999468: ITP: python-docxcompose -- concatenate/append Microsoft Word (.docx) files

2021-11-11 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-docxcompose Version : 1.3.3 Upstream Author : 4teamwork AG * URL : https://github.com/4teamwork/docxcompose * License : Expat Programming Lang: Python Description

Bug#998685: ITP: node-cross-fetch -- Universal WHATWG Fetch API for Node, Browsers and React Native

2021-11-07 Thread Andrius Merkys
Hi Nicolas, On 2021-11-06 21:38, Nicolas Mora wrote: > Le 2021-11-06 à 15 h 15, Andrius Merkys a écrit : >> >> In one of my packages I managed to drop-in replace cross-fetch with >> node-fetch [1], and it seems to work, just FYI. But since you have >> packaged cross-fe

Bug#998685: ITP: node-cross-fetch -- Universal WHATWG Fetch API for Node, Browsers and React Native

2021-11-06 Thread Andrius Merkys
Hi Nicolas, On 2021-11-06 14:26, Nicolas Mora wrote: This package is required to use node-i18next-http-backend, therefore to fix #997718 In one of my packages I managed to drop-in replace cross-fetch with node-fetch [1], and it seems to work, just FYI. But since you have packaged

Bug#998651: ITP: node-oauth-1.0a -- OAuth 1.0a request authorization

2021-11-05 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 998392 by -1 * Package name: node-oauth-1.0a Version : 2.2.6 Upstream Author : Ddo * URL : https://github.com/ddo/oauth-1.0a#readme * License : Expat Programming Lang: JavaScript

Bug#887142: Status of node-nock

2021-11-04 Thread Andrius Merkys
Hi, On 2021-11-04 12:30, Pirate Praveen wrote: > On 4 November 2021 2:18:38 pm IST, Andrius Merkys wrote: >> Now I need node-nock to run tests for node-wikibase-edit. I have >> packaged it locally. Would it be OK if I continue working on node-nock >> in its repository on

Bug#887142: Status of node-nock

2021-11-04 Thread Andrius Merkys
Hello, I found this ITP for node-nock [1] from some three years ago. Packaging is on salsa [2] and as well seems to be untouched for some time. It does not seem that the package was ever uploaded. Maybe there were some problems with it at the time? Now I need node-nock to run tests for

Bug#998434: ITP: node-propagate -- propagate events from one event emitter into another

2021-11-04 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: node-propagate Version : 2.0.1 Upstream Author : Pedro Teixeira * URL : https://github.com/nock/propagate * License : Expat Programming Lang: JavaScript Description : propagate

Bug#998392: ITP: node-wikibase-edit -- edit Wikibase from NodeJS

2021-11-03 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 998093 * Package name: node-wikibase-edit Version : 4.14.2 Upstream Author : Maxime Lathuilière * URL : https://github.com/maxlath/wikibase-edit * License : Expat Programming Lang

Bug#998093: ITP: node-wikibase-sdk -- functions to query Wikibase instances

2021-10-30 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: node-wikibase-sdk Version : 7.14.0+ds Upstream Author : Maxime Lathuilière * URL : https://github.com/maxlath/wikibase-sdk * License : Expat Programming Lang: JavaScript Description

Bug#997813: ITP: python-python-docx -- library for creating and updating Microsoft Word files

2021-10-27 Thread Andrius Merkys
Hi Sandro, On 2021-10-26 18:13, Sandro Tosi wrote: > On Mon, 25 Oct 2021 09:49:52 +0300 Andrius Merkys wrote: >> Package: wnpp >> Owner: Andrius Merkys >> Severity: wishlist >> >> * Package name: python-python-docx > what's the reason for the doubl

Bug#997813: ITP: python-python-docx -- library for creating and updating Microsoft Word files

2021-10-25 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-python-docx Version : 0.8.11 Upstream Author : Steve Canny * URL : https://github.com/python-openxml/python-docx * License : Expat Programming Lang: Python Description

Bug#924121: 924121: ITP -> RFP

2021-10-24 Thread Andrius Merkys
retitle 924121 RFP: libcassandra-client-perl -- Cassandra::Client - Perl library for accessing Cassandra noowner 924121 thanks I no longer have enough time and enthusiasm to work on packaging Cassandra-related code. I am starting with giving up ITPs, but I will maintain already packaged

Bug#997693: ITP: protege -- ontology editor

2021-10-24 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 996898 996779 996810 997050 996996 * Package name: protege Version : 5.5.0 Upstream Author : M. Horridge, C. Nyulas, T. Redmond, T. Tudorache, J. Vendetti * URL : https://protege.stanford.edu

Bug#997050: ITP: libmdock-java -- lightweight Java component nesting and docking system

2021-10-23 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libmdock-java Version : 2.0.1 Upstream Author : University of Manchester * URL : https://github.com/matthewhorridge/mdock * License : LGPL-2.1+ Programming Lang: Java Description

Bug#996996: ITP: libxmlcatalog-java -- XML Catalog Management Tool

2021-10-22 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libxmlcatalog-java Version : 1.0.5 Upstream Author : Timothy Redmond * URL : https://github.com/protegeproject/xmlcatalog * License : LGPL-3 Programming Lang: Java Description

Bug#996898: ITP: owlapi -- Java API for creating, manipulating and serialising OWL Ontologies

2021-10-20 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 996779 996547 996810 * Package name: owlapi Version : 5.1.18 Upstream Author : Ignazio Palmisano * URL : https://github.com/owlcs/owlapi * License : Apache-2.0 and LGPL-3.0

Bug#996810: ITP: rdf4j -- extensible framework for RDF and RDF Schema data

2021-10-19 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: rdf4j Version : 3.4.2 Upstream Author : Eclipse Foundation * URL : https://rdf4j.org * License : Apache-2.0 Programming Lang: Java Description : extensible framework for RDF and RDF

Bug#996779: ITP: hppcrt -- High Performance Primitive Collections RealTime

2021-10-18 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: hppcrt Version : 0.7.5 Upstream Author : Vincent Sonnier * URL : https://github.com/vsonnier/hppcrt * License : Apache-2.0 Programming Lang: Java Description : High Performance

Bug#996727: ITP: ciftools-java -- Java library to read and write CIF files

2021-10-17 Thread Andrius Merkys
Hi Pierre, On 2021-10-17 22:18, Pierre Gruet wrote: > * Package name: ciftools-java > Version : 3.0.0 > Upstream Author : Sebastian Bittrich > * URL : https://github.com/rcsb/ciftools-java > * License : Expat > Programming Lang: Java > Description :

Bug#996547: ITP: apache-commons-rdf -- type-safe, non-general API that covers RDF 1.1

2021-10-15 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: apache-commons-rdf Version : 0.5.0 Upstream Author : The Apache Software Foundation * URL : https://commons.apache.org/proper/commons-rdf/ * License : Apache-2.0 Programming Lang: Java

Bug#996543: ITP: sphinx-press-theme -- responsive theme for Sphinx documentation generator

2021-10-15 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block 995905 by -1 X-Debbugs-CC: m...@debian.org * Package name: sphinx-press-theme Version : 0.8.0 Upstream Author : Eduardo Naufel Schettino and other contributors * URL : https://github.com/schettino72

Bug#996376: ITP: cifxom -- schema and toolkit for managing CIF files in XML

2021-10-13 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: cifxom Version : 1.5+git20130201.6996fb9 Upstream Author : Nick Day * URL : https://github.com/BlueObelisk/cifxom * License : Artistic-2.0 Programming Lang: Java Description

Bug#930578: #930578: RFP: txi2p -> ITP: txi2p

2021-10-13 Thread Andrius Merkys
-team, it would be great if someone from the team could merge my requests, review the packaging and upload. [1] https://salsa.debian.org/merkys/txi2p [2] https://salsa.debian.org/pkg-privacy-team/txi2p/-/merge_requests/1 [3] https://salsa.debian.org/pkg-privacy-team/txi2p/-/merge_requests/2 [4

Bug#996196: ITP: phonopy -- phonon calculations at harmonic and quasi-harmonic levels

2021-10-12 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: phonopy Version : 2.11.0 Upstream Author : Atsushi Togo * URL : https://phonopy.github.io/phonopy/ * License : BSD-3-Clause Programming Lang: C, Python3 Description : phonon

Bug#994723: libimath-dev conflicts with libilmbase-dev

2021-10-11 Thread Andrius Merkys
Hi, On 2021-10-11 18:05, Matteo F. Vescovi wrote: > Oh, I guess I never came to that point since I was blocked by pystring > and sphinx theme in the first place. > How did you get over the sphinx theme blocker? I'm not going to > package that too... I'm full for now ;-) Interestingly,

Bug#994723: libimath-dev conflicts with libilmbase-dev

2021-10-11 Thread Andrius Merkys
Hi, On 2021-10-11 16:33, Matteo F. Vescovi wrote: > Given OCIO is still building fine with IlmBase, let's not mix too much > stuff at this stage ;-) > Let's fix OCIO first and then I/we can move to build it against > Imath/OpenEXR 3.x.y ... Sure, but does opencolorio 2.1.0 build with

Bug#994723: libimath-dev conflicts with libilmbase-dev

2021-10-11 Thread Andrius Merkys
Hi Matteo! I attempted building opencolorio in unstable using libimath-dev built from salsa [1]. opencolorio's dependencies pulled in libilmbase-dev which resulted in both trying to write to /usr/lib/x86_64-linux-gnu/libImath.so. I have no idea about these conflicting packages, but the conflict

Bug#996095: ITP: python-shelxfile -- read and write SHELXL syntax files

2021-10-11 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-shelxfile Version : 6 Upstream Author : Daniel Kratzert * URL : https://github.com/dkratzert/ShelXFile * License : Expat Programming Lang: Python Description : read and write

Bug#679905: [Debichem-devel] RFP: cctbx -- Computational Crystallography Toolbox

2021-10-06 Thread Andrius Merkys
Hi, On 2021-10-06 11:13, Andreas Tille wrote: > I've got a hint about cctbx and realised that there is an RFP (degraded > from ITP) as well as a salsa repository[1]. I took the freedom to > inject the latest upstream source and updated *parts* of the packaging > to recent standards. I have no

Bug#995755: ITP: python-crossrefapi -- Library with functions to iterate through the Crossref API

2021-10-05 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-crossrefapi Version : 1.5.0 Upstream Author : Fabio Batalha * URL : https://github.com/fabiobatalha/crossrefapi * License : BSD-2-Clause Programming Lang: Python Description

Bug#930578: 930578: current status

2021-10-04 Thread Andrius Merkys
Hello, Salsa has a repository with initial packaging of txi2p [1]. It seems that txi2p did not have Python3 support until recently [2], and to date there is no stable release providing that. So only viable option for now would be to package git head. [1]

Bug#995287: ITP: python-parsley -- Pattern-Matching Language Based on OMeta and Python

2021-09-29 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist X-Debbugs-CC: team+tahoe-t...@tracker.debian.org * Package name: python-parsley Version : 1.3 Upstream Author : Allen Short, Waldemar Kornewald, Soli Deo Gloria * URL : https://github.com/washort/parsley * License

Bug#994935: ITP: pi-tm1638 -- interface to TM1638 based displays for Raspberry Pi

2021-09-23 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 994925 * Package name: pi-tm1638 Version : 1.0 Upstream Author : Martin Oldfield * URL : https://www.mjoldfield.com/atelier/2012/08/pi-tm1638.html * License : GPL-2+ Programming Lang

Bug#994925: ITP: bcm2835 -- access to GPIO and other IO functions on the Broadcom BCM 2835 chip

2021-09-23 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: bcm2835 Version : 1.68+ds Upstream Author : Mike McCauley * URL : http://www.airspayce.com/mikem/bcm2835/ * License : GPL-3 Programming Lang: C Description : access to GPIO

Bug#994831: ITP: libapp-wdq-perl -- command line access to Wikidata Query Service

2021-09-21 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libapp-wdq-perl Version : 0.4.4 Upstream Author : Jakob Voß * URL : https://metacpan.org/release/App-wdq * License : GPL-2 Programming Lang: Perl Description : command line access

Bug#994548: ITP: liboqs -- library for quantum-safe cryptographic algorithms

2021-09-17 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: liboqs Version : 0.7.0.12.g001a3aa3 Upstream Author : , Open Quantum Safe project * URL : https://github.com/open-quantum-safe/liboqs * License : Expat Programming Lang: C Description

Bug#896978: ITP: node-http-proxy -- High performance event emitter for Node.js

2021-09-13 Thread Andrius Merkys
Hi Harley, On Thu, 21 May 2020 22:21:42 + fancycade wrote:> Work on the package can be found here: > https://salsa.debian.org/js-team/node-http-proxy I am revisiting the packaging of shiny-server. It seems that node-http-proxy is the sole remaining dependency. I remember you working on it,

Bug#991673: Update on promod3 packaging

2021-09-09 Thread Andrius Merkys
Hello, The packaging of promod3 is almost ready. Two issues remain: 1. Executable name clash on /usr/bin/pm with powerman package; 2. Need to have components.cif.gz provided by some package [1] and transformed by openstructure into format needed by promod3. I will talk to the upstream about

Bug#993496: ITP: libfeature-compat-try-perl -- make try/catch syntax available

2021-09-02 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libfeature-compat-try-perl Version : 0.04 Upstream Author : Paul Evans * URL : https://metacpan.org/release/Feature-Compat-Try * License : Artistic or GPL-1+ Programming Lang: Perl

Bug#991791: RFS: pynauty

2021-08-03 Thread Andrius Merkys
Hi Doug, On 2021-08-02 06:00, Torrance, Douglas wrote: > I've recently packaged pynauty [1], which provides a Python interface to > nauty > [2] for computing automorphism groups of graphs. > > I'm a DM, but this package would be NEW, so I need a sponsor.  Would > anyone be > willing to review? >

Bug#991791: RFS: pynauty

2021-08-02 Thread Andrius Merkys
Hi, On Mon, 2 Aug 2021, 13:35 Torrance, Douglas, wrote: > I've recently packaged pynauty [1], which provides a Python interface to > nauty > [2] for computing automorphism groups of graphs. > > I'm a DM, but this package would be NEW, so I need a sponsor. Would > anyone be > willing to review?

Bug#991791: ITP: pynauty -- isomorphism testing and automorphisms of graphs

2021-08-02 Thread Andrius Merkys
Hi, On 2021-08-02 04:46, Doug Torrance wrote: > Pynauty can be used to compare graphs for isomorphism and to > determine their automorphism group in a Python programming > environment. Pynauty is a Python/C extension module using library > components from the Nauty package by Brendan McKay.

Bug#991673: ITP: promod3 -- protein homology modelling engine

2021-07-29 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: promod3 Version : 3.2.0 Upstream Author : Swiss Institute of Bioinformatics and Biozentrum - University of Basel * URL : https://openstructure.org/promod3/ * License : Apache-2.0

Bug#989990: ITP: libgraph-maker-perl -- simple module to facilitate creation of many types of graphs

2021-06-17 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libgraph-maker-perl Version : 0.02 Upstream Author : Matt Spear * URL : https://metacpan.org/release/Graph-Maker * License : Artistic Programming Lang: Perl Description : simple

Bug#989457: ITP: skeema -- Schema management CLI for MySQL (program)

2021-06-04 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 989330 988921 989119 * Package name: skeema Version : 1.5.1+ds1 Upstream Author : Skeema * URL : https://github.com/skeema/skeema * License : Apache-2.0 Programming Lang: Golang

Bug#989330: ITP: golang-github-alecthomas-participle -- parser library for Go (library)

2021-06-01 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: golang-github-alecthomas-participle Version : 0.3.0 Upstream Author : Alec Thomas * URL : https://github.com/alecthomas/participle * License : Expat Programming Lang: Golang Description

Bug#989119: ITP: golang-github-skeema-tengo -- Go La Tengo: a MySQL automation library (library)

2021-05-26 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist Control: block -1 by 989107 * Package name: golang-github-skeema-tengo Version : 0.10.1 Upstream Author : Skeema LLC * URL : https://github.com/skeema/tengo * License : Apache-2.0 Programming Lang: (C, C

Bug#988921: ITP: golang-github-skeema-mybase -- CLI framework with MySQL-like option handling (library)

2021-05-21 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: golang-github-skeema-mybase Version : 1.0.13 Upstream Author : Skeema LLC * URL : https://github.com/skeema/mybase * License : Apache-2.0 Programming Lang: Golang Description : CLI

Bug#988782: ITP: libchemistry-ring-perl -- Represent a ring as a substructure of a molecule

2021-05-19 Thread Andrius Merkys
Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libchemistry-ring-perl Version : 0.20 Upstream Author : Ivan Tubert-Brohman * URL : https://metacpan.org/release/Chemistry-Ring * License : Artistic Programming Lang: Perl Description

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