I think the difference between the two templates is that the CLI template
adds extra navigator entries to point to ../../www and ../../config.xml.
Might still be worth not keeping two templates though, and just have these
entries be red for non-CLI projects (doesn't break builds).
On Tue, Jun
I propose to remove the non-CLI template starting in cordova-ios 4.0.0.
It was originally used to easily test your own plugins, but now we have the
alternative using the CLI:
cordova plugin add --link path/to/your/plugin