That would definitely make sense
On Thursday, August 21, 2014, Chen, Pei
wrote:
> VJ,
> Would it make sense to add in('SNOMEDCT_US') to the default
> ctakes-ytex/scripts/data/**/insert_view.sql?
> That way it'll support umls2011 as well as the newer 2014 naming
> conventions?
> Ex: inner join MR
It didn't fix the @db.schema@ - I just went in and manually changed it
whenever the CPE complained. I assume that's supposed to be reading from
ytex.properties, but mine was set and it didn't resolve that @db.schema@
issue.
On Thu, Aug 21, 2014 at 5:00 PM, John Green
wrote:
> Clayton - this ind
Clayton - this indeed did fix the @db.schema@ for you? Im gonna try and
reproduce (havent had time yet) then ill close the Jira ticket out.
JG
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On Thu, Aug 21, 2014 at 1:24 PM, Clayton Turner
wrote:
> Ah, I just switched to the ytex branch and all is good now. Th
VJ,
Would it make sense to add in('SNOMEDCT_US') to the default
ctakes-ytex/scripts/data/**/insert_view.sql?
That way it'll support umls2011 as well as the newer 2014 naming conventions?
Ex: inner join MRCONSO mrc on c.aui = mrc.aui and mrc.SAB in ( 'SNOMEDCT',
'SNOMEDCT_US','RXNORM')
--Pei
> -
Ah, I just switched to the ytex branch and all is good now. The SNOMED_US
issue has been plaguing me for weeks now so thanks a million for that.
On Thu, Aug 21, 2014 at 2:13 PM, Clayton Turner
wrote:
> Awesome. This is just what I needed for the longest time.
>
> I'm having a slight issue. When
Disregard the couldnt deploy question, got it. Ill try and update the docs
(e.g. Create a doc for the web server as it matures) but for folks like me
linking web-inf/lib to the maven dependencies was not immediately clear.
Figured it out. Other questions still stand :-)
JG
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And you did so with ctakes? Thats great, ill try it.
JG
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On Thu, Aug 21, 2014 at 12:46 PM, Finan, Sean
wrote:
>> Do you have experience with uima simple server?
> A few months ago I set it up and ran it just for kicks. It is simple, but I
> pondered that as suc
> Do you have experience with uima simple server?
A few months ago I set it up and ran it just for kicks. It is simple, but I
pondered that as such it could serve as a nice foundation. Well, maybe a
cornerstone.
> -Original Message-
> From: John Green [mailto:john.travis.gr...@gmail.c
I have. I read the docs, it mentions more information but the tutorial was very
short.
It seems there are simple get requests with the xml ae for output built into
the existing sandbox code, so I just wanted to hash that first before starting
on a new thread.
Do you have experience with ui
Hi John,
Have you (or another) thought about modifying the Uima Simple Server to run a
cTakes pipeline?
http://uima.apache.org/sandbox.html#simple-server
> -Original Message-
> From: John Green [mailto:john.travis.gr...@gmail.com]
> Sent: Thursday, August 21, 2014 3:06 PM
> To: dev@ctake
Are there any acronym annotators and disambiguators? What are people doing
in production elsewhere? Im learning the heart of cTakes and UIMA by the
numbers right now and I think writing an annotator of my own will be the
best way to solidify the information. If no one has it done already, I
thought
Im trying to deploy the cTakes web-server code someone already wrote (who
wrote it btw?). Im running into deployment issues in eclipse with tomcat 7
on mac... I can get into details but for now: is it in a working state? Im
learning as I go and it looks in order and the code is solid...
Also, Pei:
Awesome. This is just what I needed for the longest time.
I'm having a slight issue. When running either the ytex pipeline or ytex
version of the AggregatePlaintextUMLSProcessor I get an error during
initialization.
My DictionaryLookupAnnotator.xml is raising a
org.apache.uima.resource.ResourceIn
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