Hi Sean
We tried to add the SideEffectAnnotator class (add
org.apache.ctakes.sideeffect.ae.SideEffectAnnotator) to the piper, But during
initialization of the class we are getting below exception .
issue:
ERROR ProcessDirPiperRunner - Initialization of annotator class
"org.apache.ctakes.sid
Also have a look at Shangridocs:
http://github.com/chrismattmann/shangridocs/
There are a lot of places we could take that software…
Cheers,
Chris
From: andy mcmurry
Reply-To: "dev@ctakes.apache.org"
Date: Monday, June 18, 2018 at 12:18 PM
To: "dev@ctakes.apache.org"
Su
UMLS SemRep and Semantic Medline are probably better resources for parsing
papers with respect to Subject, Predicate, Object.
https://semrep.nlm.nih.gov/
https://skr3.nlm.nih.gov/SemMed
On Mon, Jun 18, 2018 at 2:40 AM, Don Flinn wrote:
> I want to parse medical research papers and am looki
To get predicate argument structure the best method is probably to use the SRL
(Semantic Role Labeling) annotator which is part of the
ctakes-dependency-parser module. Check in the desc/ directory in that module
for some sample pipelines to see its dependencies. Once you have that running,
look
I want to parse medical research papers and am looking at using Ctakes. I
do realize that Ctkes is aimed at Clinical Reports, but I would like to see
if I can use it for my purposes. I'm initially looking to get a tuple of
Subject, Predicate, Object for each sentence and later additional semantic
