Hi Maral,
You can generate different output types by adding different writers to the end
of the pipeline.
Here are the contents of the Default Clinical Pipeline piper file:
// Commands and parameters to crea
Hi Masoud,
The replacement was the same within a note, but not standardized across the
complete record for a patient. Date shifting was also within a note, not across
a record. The NER task doesn't really matter in this regard, and even for more
extensive time-series info extraction/prediction,
Hi all,
Replacement consistency on the patient vs. note level may or may not be
important depending upon the project.
For instance, If you need to place patients in a corpus on a timeline, then it
is definitely necessary to be consistent across patients - not just consistent
with names and dat
Hi Sean,
Thank you so much for your insightful response.
I'm having a problem linking the piper files. I should mention I am using
command line interface. Could you please kindly let me know:
1. What I should set my CTAKES_HOME variable into. Right now I set my
CTAKES_HOME to my cTAKES user insta
Hi Maral,
There are two slightly different directory structures. One for development
(source structure), another for end use (installation structure).
Since you have a copy of the source, lets start with that.
Are you using an IDE (Integrated Development Environment) such as IntelliJ or
Ec
Hi Sean,
Thank you very much for your kind and prompt reply. I used build profile
"runPiperGui"and it worked beautifully on my custom piper file. I
appreciate it if you kindly direct me to next steps on more run methods. As
I mentioned earlier, my final goal is to develop a OCR+NLP web service.
T
