Re: Synthetic replacement feature in cTAKES Scrubber [EXTERNAL]

name, we could make it more sensitive to that name, or if we know the street in which the person lives, we can pay more attention to that in the free text. Just wondering if any de-id tool uses this information systematically? Thank you all! Masoud On 7/17/19, 3:01 PM, "Lingren, Todd&qu

Re: Synthetic replacement feature in cTAKES Scrubber [EXTERNAL]

We had some similar work on de-id and "re-id". The impact on performance for NER tasks was minimal. https://academic.oup.com/jamia/article/20/1/84/2909298 The replacing PHI task was employed with data based on US CENSUS distribution.

substance abuse and smoking

Is anyone aware of attempts to modify/customize the smoking module of cTAKES to apply more broadly to substance abuse? Thanks in advance. -- Todd Lingren Division of Biomedical Informatics Cincinnati Children's Hospital todd.ling...@cchmc.org

posting code to the repository

Can someone walk me through how to post code to the ctakes.apache repository? Thank you. Todd Lingren Biomedical Informatics Cincinnati Children's Hospital todd.ling...@cchmc.org 513-803-9032

RE: Question about the pipeline

) at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:526) ... On Wed, Feb 4, 2015 at 8:32 AM, Lingren, Todd todd.ling...@cchmc.org wrote: Sean and Maite, FWIW, I use CmdLineCpeRunner frequently. I employ it with a bash script to automatically create a new xml file based on the subfolder names contained

RE: Question about the pipeline

Sean and Maite, FWIW, I use CmdLineCpeRunner frequently. I employ it with a bash script to automatically create a new xml file based on the subfolder names contained in the target directory. So in our HPC, it spawns a new job for each subfolder (which may have between 5 and 2500 notes). Todd

RE: [DISCUSS] new cTAKES web site

#1 is definitely my favorite. However, use #3 front page graphic in the #1 website 'examples' link. Todd Lingren Biomedical Informatics Cincinnati Children’s Hospital todd.ling...@cchmc.org 513-803-9032 -Original Message- From: Karthik Sarma [mailto:ksa...@gmail.com] Sent: Friday,

sentence splitter forks/branches

I have a general question about forks, specifically the YTEX branch that Vijay mentions. If I wanted to implement just the sentence splitter from YTEX into a currently existing 3.1 install, how would I do that? Is it possible? Or do I have to switch over completely to run from YTEX branch?

RE: using umls dictionary lookup offline?

FWIW, MetaMap does the same. Todd Lingren Biomedical Informatics Cincinnati Children's Hospital todd.ling...@cchmc.org 513-803-9032 -Original Message- From: amcmurry [mailto:mcmurry.a...@gmail.com] Sent: Friday, November 15, 2013 10:51 AM To: dev@ctakes.apache.org Subject: Re: using

RE: cTAKES user interface

-parallelization of ctakes. Todd Lingren Biomedical Informatics Cincinnati Children's Hospital todd.ling...@cchmc.org 513-803-9032 -Original Message- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Wednesday, October 30, 2013 11:15 AM To: Lingren, Todd; dev@ctakes.apache.org Subject

UMLS AE via proxy

Hi. I have an environment where I need to specify a proxy in order to get an outside http connection. Is there a location to specify a proxy in cTAKEs ? Todd Lingren Biomedical Informatics Cincinnati Children's Hospital todd.ling...@cchmc.org 513-803-9032