afs commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-496509838
I don't see any evaluation tests, only syntax tests.
Data can be provided by `VALUES ?x { 1 2 3 4 5 }` and `VALUES ?x { 1 2 3 4 5
6 }`.
afs commented on a change in pull request #568: Add Aggregate Median to SPARQL
ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r288091834
##
File path: jena-arq/testing/ARQ/Syntax/syn-arq.sh
##
@@ -328,3 +328,17 @@ WHERE
GRAPH ?g { ?s ?p ?o.
ajs6f commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r288087992
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,118 @@
neumarcx commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r288081119
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,118
ajs6f commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r288079380
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,118 @@
ajs6f commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r288077331
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,118 @@
afs merged pull request #570: JENA-1713: Switch off warning for
NON_INITIAL_DOT_SEGMENT
URL: https://github.com/apache/jena/pull/570
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afs opened a new pull request #570: JENA-1713: Switch off warning for
NON_INITIAL_DOT_SEGMENT
URL: https://github.com/apache/jena/pull/570
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afs merged pull request #569: POM maintenance
URL: https://github.com/apache/jena/pull/569
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afs opened a new pull request #569: Pom maintenance
URL: https://github.com/apache/jena/pull/569
Covers JENA-1711 (jackson update) and JENA -1712 (use https for links).
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afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-494426066
Merged to master!
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asfgit merged pull request #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557
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neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-494415007
@afs I think got this to work. did a git remote add upstream, git fetch
upstream, git merge upstream/master, git commit and followed by a git push
afs commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-494408445
`git pull upstream master` (fetch only gets the changes and does not apply
them).
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-494367891
@afs trying to sync the fork with git fetch upstream first. but don't see
your changes in the apache/jena repo yet being transferred to the
afs commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-494359631
@neumarcx - I don't see any evaluation tests.
Some tests with `VALUES ?x { 1 2 3 4 5 }` and `VALUES ?x { 1 2 3 4 5 6 }`
(the odd and even cases)
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-494123808
thank you Andy. while you are in the Syntax testing section. I have noticed
that syn.sh was not executable on checkout. might be a good idea to
afs commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-494097841
I've updated the syntax tests so that they are all script written and also
fixed bit rot where the tests were right but the script to create them was
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-494062956
OK yes, looks like these tests haven't been touched for quite some time on
syn.sh throwing errors for the bindings tests as mentioned in the
afs commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493950749
`syn-func.sh` and loaded with `source syn-func.sh` in `syn.sh`.
This is an
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493658989
where do the fname and testGood commands come from?
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afs commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493518708
The driver script is `syn.sh` - it sets the output directory by cd'ing into
it and running the script:
```
# ARQ
(
cd Syntax-ARQ
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493505146
> Syntax test: the syntax manifest and target query files are generated from
various "syn-*.sh" files. (But that is a bash shell script to be
neumarcx commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r285185337
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,123
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493487384
> One observation is that the Commons Math library used notes that for
percentile based stats to be evaluated correctly the data should be at
neumarcx commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r285162989
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedianDistinct.java
##
@@ -0,0
afs commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493483043
Syntax test: the syntax manifest and target query files are generated from
various "syn-*.sh" files. (But that is a bash shell script to be run.)
afs commented on a change in pull request #568: Add Aggregate Median to SPARQL
ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r285159993
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedianDistinct.java
##
@@ -0,0
afs commented on a change in pull request #568: Add Aggregate Median to SPARQL
ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r285159912
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,125 @@
+/*
afs commented on a change in pull request #568: Add Aggregate Median to SPARQL
ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r285153474
##
File path: jena-arq/pom.xml
##
@@ -113,6 +113,12 @@
commons-lang3
+
+ org.apache.commons
ajs6f commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r285133389
##
File path: jena-arq/Grammar/sparql_11.jj
##
@@ -1318,6 +1318,8 @@ Expr Aggregate() : { Aggregator agg = null ;
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493263872
Where is the best place for the ARQ median function test in the testing
folder
jena/jena-arq/testing/ARQ/Syntax?
neumarcx commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r284931581
##
File path: jena-arq/Grammar/sparql_11.jj
##
@@ -1318,6 +1318,8 @@ Expr Aggregate() : { Aggregator agg =
rvesse commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-493031741
One observation is that the Commons Math library used notes that for
percentile based stats to be evaluated correctly the data should be at least
rvesse commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r284658058
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,123 @@
rvesse commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r284659933
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,123 @@
rvesse commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r284656594
##
File path: jena-arq/Grammar/sparql_11.jj
##
@@ -1318,6 +1318,8 @@ Expr Aggregate() : { Aggregator agg = null
rvesse commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r284656165
##
File path: jena-arq/Grammar/master.jj
##
@@ -2045,6 +2045,9 @@ Expr Aggregate() : { Aggregator agg = null ;
rvesse commented on a change in pull request #568: Add Aggregate Median to
SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#discussion_r284658880
##
File path:
jena-arq/src/main/java/org/apache/jena/sparql/expr/aggregate/AggMedian.java
##
@@ -0,0 +1,123 @@
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-492696407
can you ignore the test case and the last PR update and succesfully build?
This
neumarcx commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-492690620
OK, I don't but the error looks good. median should not pass on SPARQL1.1.
just updated PR.
ajs6f commented on issue #568: Add Aggregate Median to SPARQL ARQ syntax
URL: https://github.com/apache/jena/pull/568#issuecomment-492664185
@neumarcx I'm getting a test error trying to build this. Are you seeing what
I show below?
```
...
[INFO] Running
neumarcx opened a new pull request #568: Add Aggregate Median to SPARQL ARQ
syntax
URL: https://github.com/apache/jena/pull/568
this adds aggregate MEDIAN as keyword to the SPARQL ARQ syntax
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afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-490459291
I've merged the PR onto to working branch
[geosparql](https://github.com/apache/jena/tree/geosparql) with most of the
post-merge changes applied.
Outstanding:
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-490167509
@galbiston - Thanks. The license text was passing the RAT checks but there
was extra wording like "Copyright the authors". Not wrong, but a variation.
Copyright and IP
galbiston commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-489695240
Apologies for the license issue. I thought I'd tidied them all up. I've also
removed the lines of test name output, removed the commented out test results
and
afs merged pull request #567: JENA-1709: Password file implies logged-in users
URL: https://github.com/apache/jena/pull/567
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rvesse commented on a change in pull request #567: JENA-1709: Password file
implies logged-in users
URL: https://github.com/apache/jena/pull/567#discussion_r280333708
##
File path:
jena-fuseki2/jena-fuseki-main/src/main/java/org/apache/jena/fuseki/main/FusekiServer.java
afs opened a new pull request #567: JENA-1709: Password file implies logged-in
users
URL: https://github.com/apache/jena/pull/567
and some other minor fixes and log warnings.
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afs commented on issue #546: JENA-1687: refine NodeFactory return types
URL: https://github.com/apache/jena/pull/546#issuecomment-487892216
Thanks!
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jmkeil commented on issue #546: JENA-1687: refine NodeFactory return types
URL: https://github.com/apache/jena/pull/546#issuecomment-487882901
Yes. The change is unnecessary.
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jmkeil closed pull request #546: JENA-1687: refine NodeFactory return types
URL: https://github.com/apache/jena/pull/546
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afs merged pull request #561: JENA-1572: Remove L in modules that don't need
them
URL: https://github.com/apache/jena/pull/561
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afs commented on issue #546: JENA-1687: refine NodeFactory return types
URL: https://github.com/apache/jena/pull/546#issuecomment-487873750
Given the other PRs and discussion on
[JENA-1687](https://issues.apache.org/jira/browse/JENA-1687), I don't think we
should make the change from the
afs edited a comment on issue #547: JENA-1688: add methods Node#asBlank,
Node#asConcret, Node#asLiteral, Node#asURI, Node#asVariable
URL: https://github.com/apache/jena/pull/547#issuecomment-476405301
This seem related to PR#546 and the discussion on
afs merged pull request #566: Update maven-bundle-plugin
URL: https://github.com/apache/jena/pull/566
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afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487384847
@galbiston -- Sorry - I've missed something.
Some of the files have the Apache License for contributed software, (example
`GeoSPARQLConfig.java`) and some have
desruisseaux commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487301304
About precision, note that `Math.sin`, `cos` _etc._ are not fully
deterministic even in Java. The specification said only that the result must be
within 1 or 2
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487297031
## Status (2019-04-27)
### Next
I've made some changes locally and got the build to work with tests.
All the changes are detailed below. If the
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487110358
"mvn clean test" takes 12s.
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ajs6f commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487099217
Cool, then we can build it once and pass the location around via a Maven
property.
This is an
desruisseaux commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487098680
The performance interrogation was because SIS may try to create the EPSG
geodetic database in that directory (depending if
`org.apache.sis.non-free:sis-epsg`
ajs6f edited a comment on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487095451
@desruisseaux We have I/O tests that take five minutes to run-- I'm not sure
that making a few empty directories is going to change our build time very
much,
ajs6f commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487095451
@desruisseaux We have I/O tests that take five minutes to run-- I'm not sure
that making a few empty directories is going to change our build time very
much, but if
desruisseaux commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487092706
`SIS_DATA` is an environment variable, while Maven Surefire
`` is (in my understanding) for Java properties.
Another issue is that pointing to
ajs6f commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487088627
@afs Can we not use some Maven for that? We could put an empty `SIS_DATA`
directory in `src/test/resources` and then:
```
afs edited a comment on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487086401
@ajs6f - create an empty test directory, point `SIS_DATA` to it. However,
it takes some fixing to get the module running at the moment.
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487086401
@ajs6f - create an empty test directory, point `SIS_DATA` to it. However,
it takes some fixing to get the module at the moment.
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487081192
@desruisseaux - perfect! Thank you.
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ajs6f commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487079821
@afs No, sorry, I meant to ask you to point me at what we want to run
_before_ the tests: the setup step.
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487079179
> @afs Can you point me at what we actually want to run?
The tests are in src/test as usual and run with surefire finding \@Test. It
is not urgent at this
desruisseaux commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487078186
Actually, while preparing the email to OGC, I found answer to the question
in their [legal FAQ](http://www.opengeospatial.org/ogc/legalfaq#DTD). Quoting
them:
ajs6f commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487070553
@afs Can you point me at what we actually want to run? Are we talking about
setting up some of these GIS reference databases like the stuff in `SIS_DATA`,
or
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487070583
@desruisseaux, if you could ask OGC that would be great. It makes sense to
restrict documents that are the definitive specifications (as do most standards
organisations
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487069142
@ajs6f It is currently working by surefire finding the tests so there is no
place to add a suite-wide step. If we add such as step with `RunWith` /
`SuiteClasses` we
desruisseaux commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487064619
Hello @afs . The question about the exact license governing the RDF file is
a good one. I confirm that OGC "Software" license is BSD-like and classified as
ajs6f commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487061029
@afs This PR is so big I cannot even load the list of files in Github's
browser. Since we are still using JUnit 4 we can write a
afs edited a comment on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487046910
Next issue: `geosparql_vocab_all_v1_0_1_updated.rdf`
It references the OGC license for documents
http://www.opengeospatial.org/legal/
But is it
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487046910
Next issue: `geosparql_vocab_all_v1_0_1_updated.rdf`
It references the OGC license for documents
http://www.opengeospatial.org/legal/
But is it "document" or
afs edited a comment on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487025047
> Set the SIS_DATA environment variable to the path of an initially empty
directory (preferred choice).
Ignoring that, and running with a java8 JDK
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-487025047
I'm using this in the POM for the tests:
```
org.apache.sis.non-free
sis-embedded-data
0.8
test
afs opened a new pull request #566: Update maven-bundle-plugin
URL: https://github.com/apache/jena/pull/566
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afs merged pull request #564: JENA-1708: Remove unused javadoc artifact
depedencies
URL: https://github.com/apache/jena/pull/564
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afs merged pull request #565: Update javadoc configuration to support jdk11
builds
URL: https://github.com/apache/jena/pull/565
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acoburn opened a new pull request #565: Update javadoc configuration to support
jdk11 builds
URL: https://github.com/apache/jena/pull/565
This updates the javadoc configuration so that JDK11-based builds will
succeed at the javadoc stage. As with the current maven configuration, the Java
ajs6f commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-486723449
Hello, @galbiston-- can you explain a bit what you mean by "I don't think
there is an equivalent for Maven for test only." Are we trying to put resources
on the
afs opened a new pull request #564: JENA-1708: Remove unused javadoc artifact
depedencies
URL: https://github.com/apache/jena/pull/564
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afs merged pull request #560: JENA-1706: Handle "QueryParser"; suppress logging
WARN
URL: https://github.com/apache/jena/pull/560
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afs commented on issue #560: JENA-1706: Handle "QueryParser"; suppress logging
WARN
URL: https://github.com/apache/jena/pull/560#issuecomment-486602867
This follows on from #536.
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afs merged pull request #563: JENA-1707: Skip building modules unless java8
URL: https://github.com/apache/jena/pull/563
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afs commented on issue #563: JENA-1707: Skip building modules unless java8
URL: https://github.com/apache/jena/pull/563#issuecomment-486601549
HADOOP-15338
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galbiston commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-486419457
I had the SIS_DATA dependency resolved in Gradle for testing both modules by
"testImplementation "org.apache.sis.non-free:sis-embedded-data:$sisVersion". I
don't
afs opened a new pull request #563: JENA-1707: Skip building modules unless
java8
URL: https://github.com/apache/jena/pull/563
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afs opened a new pull request #562: JENA-1695: Modular storage interface and
framework
URL: https://github.com/apache/jena/pull/562
JENA-1695: Modular storage interface and framework
This is the first of two pull requests.
This is the framework and adjusting the code base
afs opened a new pull request #561: JENA-1572: Remove L in modules that don't
need them
URL: https://github.com/apache/jena/pull/561
Work in JENA-1572.
This removes LICENSE and NOTICE files that arne't needed for a modules
source code.
afs opened a new pull request #560: JENA-1706: Handle "QueryParser"; suppress
logging WARN
URL: https://github.com/apache/jena/pull/560
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afs merged pull request #558: Support configuring syntax for Parameterized
SPARQL (JENA-1705)
URL: https://github.com/apache/jena/pull/558
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afs merged pull request #559: JENA-1659: Improve tests for western hemisphere
timezones
URL: https://github.com/apache/jena/pull/559
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acoburn opened a new pull request #559: JENA-1659: Improve tests for western
hemisphere timezones
URL: https://github.com/apache/jena/pull/559
This adjusts the timezone function to pass when run in a
timezone to the west of GMT.
This is a follow-in to JENA-1659
afs commented on issue #557: JENA-664 GeoSPARQL Jena
URL: https://github.com/apache/jena/pull/557#issuecomment-485901035
I have found http://sis.apache.org/epsg.html and got the tests running
locally. Sorry for the noise above.
Test pass!
Some noise to be tuned out from
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