Re: fasta parser with iopipe?

2017-08-30 Thread Steven Schveighoffer via Digitalmars-d-learn
On 8/28/17 10:08 AM, biocyberman wrote: @Steve: Yes we talked at dconf 2017. I had to other things so D learning got slow down. I am trying with Fasta format before jumping to Fastq again. The jsoniopipe is full feature, and relatively small project, which can be used to study case. However

Re: fasta parser with iopipe?

2017-08-28 Thread biocyberman via Digitalmars-d-learn
On Wednesday, 23 August 2017 at 13:06:36 UTC, Steven Schveighoffer wrote: On 8/23/17 5:53 AM, biocyberman wrote: [...] I'll respond to all your questions with what I would do, instead of answering each one. I would suggest an approach similar to how I approached parsing JSON data. In your

Re: fasta parser with iopipe?

2017-08-23 Thread Steven Schveighoffer via Digitalmars-d-learn
On 8/23/17 5:53 AM, biocyberman wrote: I lost my momentum to learn D and want to gain it up again. Therefore I need some help with this seemingly simple task: # Fasta sequence \>Entry1_ID header field1|header field2|... CAGATATCTTTGATGTCCTGATTGGAAGGACCGTTGGCCACCCTTAGGCAG

Re: fasta parser with iopipe?

2017-08-23 Thread Nicholas Wilson via Digitalmars-d-learn
On Wednesday, 23 August 2017 at 09:53:49 UTC, biocyberman wrote: I lost my momentum to learn D and want to gain it up again. Therefore I need some help with this seemingly simple task: # Fasta sequence \>Entry1_ID header field1|header field2|...

fasta parser with iopipe?

2017-08-23 Thread biocyberman via Digitalmars-d-learn
I lost my momentum to learn D and want to gain it up again. Therefore I need some help with this seemingly simple task: # Fasta sequence \>Entry1_ID header field1|header field2|... CAGATATCTTTGATGTCCTGATTGGAAGGACCGTTGGCCACCCTTAGGCAG TGTATACTCTTCCATAAACGAGCTATTAGTTATGAGGTCCGTAGATTGGGG

Re: Fasta parser

2012-11-12 Thread Dmitry Olshansky
11/11/2012 9:34 PM, bioinfornatics пишет: Hi, I wrote a fasta parser for biology computing http://pastebin.geany.org/yheQN/ I would like to get your experience to know if the writer could be better. The given parser use MmFile and Phobos range. fasta specification format = http

Re: Fasta parser

2012-11-12 Thread Dmitry Olshansky
11/12/2012 2:14 PM, Tobias Pankrath пишет: On Monday, 12 November 2012 at 09:16:54 UTC, Dmitry Olshansky wrote: 11/11/2012 9:34 PM, bioinfornatics пишет: Hi, I wrote a fasta parser for biology computing http://pastebin.geany.org/yheQN/ I would like to get your experience to know if the writer

Re: Fasta parser

2012-11-12 Thread bioinfornatics
Le dimanche 11 novembre 2012 à 18:34 +0100, bioinfornatics a écrit : Hi, I wrote a fasta parser for biology computing http://pastebin.geany.org/yheQN/ I would like to get your experience to know if the writer could be better. The given parser use MmFile and Phobos range. fasta

Re: Fasta parser

2012-11-11 Thread bioinfornatics
Le dimanche 11 novembre 2012 à 18:34 +0100, bioinfornatics a écrit : Hi, I wrote a fasta parser for biology computing http://pastebin.geany.org/yheQN/ I would like to get your experience to know if the writer could be better. The given parser use MmFile and Phobos range. fasta

Re: Fasta parser

2012-11-11 Thread Simen Kjaeraas
On 2012-34-11 18:11, bioinfornatics bioinfornat...@fedoraproject.org wrote: Hi, I wrote a fasta parser for biology computing http://pastebin.geany.org/yheQN/ I would like to get your experience to know if the writer could be better. The given parser use MmFile and Phobos range. fasta

Re: Fasta parser

2012-11-11 Thread bioinfornatics
Le dimanche 11 novembre 2012 à 19:58 +0100, Simen Kjaeraas a écrit : On 2012-34-11 18:11, bioinfornatics bioinfornat...@fedoraproject.org wrote: Hi, I wrote a fasta parser for biology computing http://pastebin.geany.org/yheQN/ I would like to get your experience to know

Re: Fasta parser

2012-11-11 Thread bioinfornatics
Le dimanche 11 novembre 2012 à 18:34 +0100, bioinfornatics a écrit : Hi, I wrote a fasta parser for biology computing http://pastebin.geany.org/yheQN/ I would like to get your experience to know if the writer could be better. The given parser use MmFile and Phobos range. fasta