[easybuild] FSL build question: installdir vs builddir

Hi, We are working on a build of FSL with SLURM support patches.  During the build we found that the FSL easybuild unpacks the upstream source tarball in the installdir and doesn't use the builddir.  This is by design in the fsl easy block. (self.build_in_installdir = True) I suspect this

Re: [easybuild] Redhead/CentOS 7.4 and Intel compiler issues

Could someone clarify if this bug also affects software built with Intel on CentOS/RedHat 7.3 and then run on the 7.4 OS versions? Or is this only affecting new builds on 7.4 with the Intel compilers. In other words, does it break software built with Intel on prior OS releases an run on the 7.4

Re: [easybuild] downloading jdk automatically

e > <mailto:ward.poelm...@ugent.be>> wrote: > > On 22-03-16 15:40, John-Paul Robinson wrote: > > Hi, > > > > How are folks dealing with staging jdk downloads for ebs that > require > > them. Given the Oracle process for accessin

Re: [easybuild] HPCBioS Discussion Doodle

Are the hangout details for tomorrow's hpcbios discussions available somewhere? Thanks, ~jpr On 03/01/2016 08:02 AM, Robert Schmidt wrote: > Hi easybuilders, > > I've set up a doodle so we can chat about bioinfo software in > easybuild and perhaps pull up the versions and toolchains. > >

Re: [easybuild] goolf-1.4.10, CentOS 7 and HPCBIOS

Thanks for the update on the status and thoughts around HPCBIOS. I'm interested in exploring these options. We are in the process of migrating from ROCKS5 (CentOS5) to a platform based on CentOS7. As part of this, we're adopting EasyBuild to manage builds. A large part of our community is

[easybuild] goolf-1.4.10, CentOS 7 and HPCBIOS

Hi folks, There are many easybuilds created from the HPCBIOS effort that depend on goolf-1.4.10 which in turn depends on GCC 4.7.2. This GCC has a bug in it's texinfo docs that causes a parsing error and GCC build failure when the system texinfo is at version 5x, as is the case on CentOS7. BTW,

Re: [easybuild] best practices for updating an existing easyconf

; ('OpenMPI', '1.8.4', '', comp), # part of gompi-1.6.20 --- > comp, > ('OpenMPI', '1.8.4', '', comp), Thanks for the pointers, ~jpr On 10/09/2015 05:08 PM, John-Paul Robinson wrote: > Thanks for all the helpful information and for the welcome aboard! > > On 10/09/2015 03:26 P

[easybuild] best practices for updating an existing easyconf

Hi, I'm using EasyBuild 2.3.0 and are wanting to build Cufflinks. We tried the Cufflinks-2.2.1-goolf-1.4.10.eb on CentOS and the build fails. Fixing the the build falls into one of several categories: * patch GCC 4.7.2 (https://gcc.gnu.org/bugzilla/show_bug.cgi?id=52903) * update goolf-1.4.10